Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2853 ATGGGTGGAAATTCACCATGTGCTTCATGCAAGCTTCTGAGAAGAAGATGCACAAAAGATTGCACCTTTGCTCCTTATTTTCCTTCTCATGAACCCCAAAAATTTGCCATAGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAGCTTCCAGTTCACCAAAGAGCAGATGCAGTAAACAGTTTAGTCTATGAAGCAAATGCAAGAGTGAGGGATCCAGTTTATGGCTGTGTTGGAGCAATATCTTACTTGCAAAATCAAGTTTCTGAGCTTCAAATGCAACTTGCAGTTGCTCAAGCAGAGATACTATGCATCCAGATGCAAAATGAGCAAGTTATTCCAACACCACAAATCAACCAAGATCAGAAATCATACTATATCCAAGATGAACTCACTCAGTACCTTAATTACGGTTCTTCTTCTAGTAATAATGTAATTCATGATTCTCTTAAGAGAGAGAATAATATGTATGGACATGATATGGTTTCTTGA 504 0.381 MGGNSPCASCKLLRRRCTKDCTFAPYFPSHEPQKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEQVIPTPQINQDQKSYYIQDELTQYLNYGSSSSNNVIHDSLKRENNMYGHDMVS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2853 167 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Mtr5g2853 167 Coils Coil 85 105 - -
Mtr5g2853 167 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 1 161 - -
Mtr5g2853 167 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Mtr5g2853 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2853 Mtr-Chr5 37116993 37118527 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2853 3 131 AS2 family AT2G30130 79.699 7.72e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g2853 LOB 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2853 - - lang:109360574 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2203 3 35633594 35634678 Mtr5g2853 5 37116993 37118527 ECH
Mtr5g2853 5 37116993 37118527 Mtr5g2853 5 37116993 37118527 ECH
Mtr3g2203 3 35633594 35634678 Mtr5g2853 5 37116993 37118527 PCT