Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2851 ATGAATGAAGATTGGAATCCAAAAGTAGATATGGTTTTCTGTAGCTTTGAAGATGCTTGGGAGTTCTGGAACACTTACGGTGGTAAGGTTGGATTCGGAGTGAGGAAAGATTATACACACAGAAAAAAGGATGGTTCAGTTTCTTCTTGTAGGTTTGTTTGCTGCAAAGAAGGCATGCGAAAGCCAGACAAGCGAGATTATAAAACAAAGAATCCAAGACTAGAGACCAGAACAAATTGTGAAGCAAGGTTAGGACTTAAGAATGTGGATGGAAAATTGATGGTGCATGATTTTGTGGAGGACCACAACCACGAGTTACTTTTGCCAGAAACAACTCATATGTTGTCGTCTCAACGAAAGGTTTCTGAAATTCATTGTCAACAAATTGAACTAGCTGATAGTGTCGGTGTACAACAAAAGAAATCGTTTGATTTATTGAGTAAAGAAGTAGGAGGCAGAACTAACTTGGGTTTTATACGTCTTGATCAAAAGAATTATCTTCGGAAAAAAAGAGAAAGAAGTTTGGTACAAGGGGAGGCCGGCTATTTATTGCAATACTTTCAAAGAAAGACGGTAGAAAATCCAACTTTCTACCATGCTTATCAGCTAGATATTGAAGATCAAATCACCAATGTGTTTTGGGCAGATGCTAGGATGCTGGTTGATTACAGTTATTTTGGTGATGTTGTTTCTCTTGATTCAACATATTGCACAAATAGTTCGCACAGACCACTAGCAATCATCTCGGGATTTAACCACCATCGAGGAGCCGTAATTTTTGGAGCTGCATTATTATATGACGAAACTGCTGAGTCATACGAGTGGCTATTTGAGACATTTCTAGAAGCACATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGCCAAATCAATGGCAAAAGCATTAGCCGAGGTTATGCCTGAAGCTTACCATGGTTTAAGTACGTGGCACTTGATGCAAAATGGAATTAAACACTTAGGAAATTTAATGAAGGGGGAATCTTATTTTCTTAGTGACTTTAAGAAATGCATGTATGGTTATGAAGATGTAGAACAATTTGAAGATGGTTGGACATCCCTCCTTATAAAGTATGGTGTTCAGAAAAATAATTGGTTGCAAAGAATGTACAATATAAAGGAGAAATGGGCATCTTGTTACATGAAGAAGACTTTGACATTAGGGATGCGAAGCACTCAACTTAGTGAAAGTGTGAATGTAGATATTAAAAATTTTATGAGTAAGAACTTGGATTTAATTAAATTTTTTGAGCGTTTTGAAGATGTTGTAGAAGAAAAGCGGTATAAAGAATTGAAGTGTGAATTTGAAGCACGCCAAAAAATTCCAAGACTGAAGAACTCATATTCTGATATTTTGCAACAAGTGTCCAAGCTTTATAATCCTACTATTTTCGACTTATTCCAACGTGAGTATGAGTTGTTTGAAGCATGCTTTGTGAAAAGCATGGACATACAAACATCATCATCTACTTATGTTATTGCCAAGAAAAGGAATATGGGAGAATGGCAAGTGACCTTCGATTTGGAAAAGAATACAATTTGTTGCTCTTGTCGTAAATTTGAAAGCTTTGGCATACTTTGTTGTCATTGCTTAAAAGTCTTCATTCATATGGACGTTACATCAGTGCCTGAGCCTTATATTTTAAAGAGGTGGACAAAGATAGCAAGAAGTAGAGCTTCACAAACTATTGGTGTTAGTCATGTGGTAGAAGACTTGGATTTATCTCCAGCACAATGTTATAAGGAAATTTGTCCCCACTTTATTAGGATAGTCACAGAAGGATGTAGAAGTCCAGAAGCTGTTGAGTTTCTTAAGGAAGTTGCTGATGAATTGGACGAGCAAATGCTAAAGTTTCAAAATATGCAAATAAGTAGTGAACAAGTGAATGGAACCTCTAACAATATTAAAGAGATATCAATTACTAATGATTGTGCAACACAAGTAAAGGGGTTTAAGAACAACGAAGGTCCAAAGGGTTCAAAACGTTGGAAAGGTTGGGTAGAAACAAAACTGGCCAAGAGAAAGAAACGTGCGAAGTCCATTGCTTCACAAATTCAAGAACCTATGGTATTATTAATATATTTAGTTTTATTTTTTGTTTTTGTTGACTACATAAGCTTACCTTTATATTCCTTTTTTCGTGTAGAAGAACAAAGGTAA 2184 0.3603 MNEDWNPKVDMVFCSFEDAWEFWNTYGGKVGFGVRKDYTHRKKDGSVSSCRFVCCKEGMRKPDKRDYKTKNPRLETRTNCEARLGLKNVDGKLMVHDFVEDHNHELLLPETTHMLSSQRKVSEIHCQQIELADSVGVQQKKSFDLLSKEVGGRTNLGFIRLDQKNYLRKKRERSLVQGEAGYLLQYFQRKTVENPTFYHAYQLDIEDQITNVFWADARMLVDYSYFGDVVSLDSTYCTNSSHRPLAIISGFNHHRGAVIFGAALLYDETAESYEWLFETFLEAHKQKMPQTVFTDQAKSMAKALAEVMPEAYHGLSTWHLMQNGIKHLGNLMKGESYFLSDFKKCMYGYEDVEQFEDGWTSLLIKYGVQKNNWLQRMYNIKEKWASCYMKKTLTLGMRSTQLSESVNVDIKNFMSKNLDLIKFFERFEDVVEEKRYKELKCEFEARQKIPRLKNSYSDILQQVSKLYNPTIFDLFQREYELFEACFVKSMDIQTSSSTYVIAKKRNMGEWQVTFDLEKNTICCSCRKFESFGILCCHCLKVFIHMDVTSVPEPYILKRWTKIARSRASQTIGVSHVVEDLDLSPAQCYKEICPHFIRIVTEGCRSPEAVEFLKEVADELDEQMLKFQNMQISSEQVNGTSNNIKEISITNDCATQVKGFKNNEGPKGSKRWKGWVETKLAKRKKRAKSIASQIQEPMVLLIYLVLFFVFVDYISLPLYSFFRVEEQR* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2851 727 SMART 26again6 521 548 IPR006564 GO:0008270
Mtr5g2851 727 Pfam FAR1 DNA-binding domain 21 107 IPR004330 -
Mtr5g2851 727 Coils Coil 609 629 - -
Mtr5g2851 727 Pfam SWIM zinc finger 511 544 IPR007527 GO:0008270
Mtr5g2851 727 Pfam MULE transposase domain 229 323 IPR018289 -
Mtr5g2851 727 PANTHER OS03G0181600 PROTEIN 2 632 - -
Mtr5g2851 727 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 632 IPR031052 GO:0006355
Mtr5g2851 727 ProSiteProfiles Zinc finger SWIM-type profile. 510 546 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2851 Mtr-Chr5 37094286 37096469 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr5g2851 MULE 6.1e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2851 - - ccaj:109815076 905.59