Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2842 ATGAATGATCCTAGATCAAAGATGATGATATCTCCAGGTTTATTACCAACAGAATCATTACTAGATTCATTGATTCTAATATCCAATGAAGTTAGTTCAATGCAGAAATTTCCATTAGTACAAATAAAAAATGTATCATCCATGATAAGAAGGATCAAGCTTCTTTCATCTTTGTTTGAAGAGATTCAAGAATCAGATTCACCACTTCCACCTTCTTCAATCCTTTGTTTCATAGAAATCTTTTCTGTGATCACAAGAGTGAAGGTCTTGATCCAAGAATGCACAGATGGAAGCTCTCTTTGGAGTCTCATACAATTGGATTTCATTTCAAATCAATTTTTTGTGCTTGTAAAAGAAATGGGAAGAGCACTTGATATTCTACCTCTAAATTTGCTTAATGTAGCACAAGATATAAAGGAGCAAGTTGATCTTTTGCATAAACAATCCAAGAGAGTTGAACTTGAATTATTCATTGATCCTAGAGAAGTTCAAAGAAGGGAAAATCTTTTCGAAGTAATGTCGAAAAATTGTTTACAAAACAAGAAGACCAACAACAATAAAGGGTTTATTGATTTTGTGAAAGTGGAAGAAATAATGTGTAGCATTGGTTTGAGAACTTTATCAGATTATGTTGAAGAAATATCAAAGTTAGAAGTTGAAGCTCAGAATCAAGCAGGAACAGGTGGACTAATTGTTGTCTCAAACATAAACAATCTCATGTCACTTGTTTCATATACCAAATCAATGGTATTTAGAAATGATGGAGAATCAGAAGAGTGTAAGCCAATATCTATGTTTTTATACAACAAAAGTAAAATACATGATAATGATAGTTCTTCTTCATCTTCTTTTTCTCAATCCATGATGACAGTTAATATTCCTGACGAATTTCGTTGTCCGATTTCGCTAGACCTAATGAGAGATCCTGTGATTGTTTCATCAGGACACACTTATGATAGAATTTCAATTGCAGAATGGATTAACTCTGGTCACCACACTTGTCCTAAAAGTGGACAAAGACTAATTCACACTGCTCTAATACCAAACTATGCGTTGAAGAGCCTTGTTCATCAATGGTGCTATGAAAACAATGTCAAAATGAATGAGGCAATCACAAAAAACAACAATAGTAGCAGCAAAAGGCACAAGAATGAGAATGCTATTGATCACATTTCAGAAAACAAAGCATCAAAAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTAGCAACTGGTTCGACCGATATCCAAAGACAATCCGCGTACGAGATACGTCTGCTCGCAAAAACCGGTATGGATAACCGAAGAATCATAGCCGAGGTAGGTGCTATTCCGTTTCTAGTAACACTTTTAGTATCTAAAGATTCAAGAATTCAAGAGCATGTTGTGACTGCATTGTTCAACCTATCGATCTACGACAATAACAAGATTTTAATCATGGCGGCTGGAGCGATTGACAACATAGTCGAAGTACTCGAATTCGGAAAAACAATGGAAGCAAGAGAAAATGCAGCAGCAGCAATATATAGTTTATCTATGATTGATGATTGTAAAGTGCAAATTGGAGCAAGTTCTAGGGCAATACCTGCATTAGTAGGACTATTAAAAGAAGGTACAATTATAGGTAAAAGAGATGCTGCAACTGCATTGTTTAATCTTGCAGTTTATAATCCTAATAAATTGAGTATTGTTAAAAGTGGAGCAGTTACTTTGCTTGTTGAGTTGTTGATGGATGATAAAGCCGGTATAACCGACGATTCATTGGCGGTTCTTGCCGTTCTTTTAGGTTGTTCTGAGGGGTTGGAAGAGATAAAGAATAGTAAAAGTTTGGTGCCTCTTCTTATTGATCTTTTGAGATTTGGTTCTGTTAAAGGGAAGGAAAATTCAATAACACTTTTACTTGGATTGTGTAAAGAAGAAGGGGAATTGGTTGCAATGAGACTTTTGGCAAATCCAAGGAGTATTCCTTCTCTTCAAAGTTTGGCTGCTGATGGTTCTTTGAGAGCTAGGAGAAAAGCTGATGCATTGCTTAGGTTGCTTAATAGGTGTTGTTCTCAACCTCATCATTCTTTGTGA 2085 0.3535 MNDPRSKMMISPGLLPTESLLDSLILISNEVSSMQKFPLVQIKNVSSMIRRIKLLSSLFEEIQESDSPLPPSSILCFIEIFSVITRVKVLIQECTDGSSLWSLIQLDFISNQFFVLVKEMGRALDILPLNLLNVAQDIKEQVDLLHKQSKRVELELFIDPREVQRRENLFEVMSKNCLQNKKTNNNKGFIDFVKVEEIMCSIGLRTLSDYVEEISKLEVEAQNQAGTGGLIVVSNINNLMSLVSYTKSMVFRNDGESEECKPISMFLYNKSKIHDNDSSSSSSFSQSMMTVNIPDEFRCPISLDLMRDPVIVSSGHTYDRISIAEWINSGHHTCPKSGQRLIHTALIPNYALKSLVHQWCYENNVKMNEAITKNNNSSSKRHKNENAIDHISENKASKDAVKMTAEFLVGKLATGSTDIQRQSAYEIRLLAKTGMDNRRIIAEVGAIPFLVTLLVSKDSRIQEHVVTALFNLSIYDNNKILIMAAGAIDNIVEVLEFGKTMEARENAAAAIYSLSMIDDCKVQIGASSRAIPALVGLLKEGTIIGKRDAATALFNLAVYNPNKLSIVKSGAVTLLVELLMDDKAGITDDSLAVLAVLLGCSEGLEEIKNSKSLVPLLIDLLRFGSVKGKENSITLLLGLCKEEGELVAMRLLANPRSIPSLQSLAADGSLRARRKADALLRLLNRCCSQPHHSL* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2842 694 Gene3D - 368 543 IPR011989 -
Mtr5g2842 694 SUPERFAMILY ARM repeat 391 683 IPR016024 -
Mtr5g2842 694 SUPERFAMILY RING/U-box 283 367 - -
Mtr5g2842 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 529 571 IPR000225 GO:0005515
Mtr5g2842 694 SMART Ubox_2 296 359 IPR003613 GO:0004842|GO:0016567
Mtr5g2842 694 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 17 691 - -
Mtr5g2842 694 Coils Coil 135 155 - -
Mtr5g2842 694 Pfam Armadillo/beta-catenin-like repeat 436 473 IPR000225 GO:0005515
Mtr5g2842 694 PANTHER U BOX DOMAIN-CONTAINING 17 691 - -
Mtr5g2842 694 SMART arm_5 600 641 IPR000225 GO:0005515
Mtr5g2842 694 SMART arm_5 475 516 IPR000225 GO:0005515
Mtr5g2842 694 SMART arm_5 434 474 IPR000225 GO:0005515
Mtr5g2842 694 SMART arm_5 518 558 IPR000225 GO:0005515
Mtr5g2842 694 SMART arm_5 559 599 IPR000225 GO:0005515
Mtr5g2842 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 367 IPR013083 -
Mtr5g2842 694 Pfam U-box domain 293 363 IPR003613 GO:0004842|GO:0016567
Mtr5g2842 694 ProSiteProfiles U-box domain profile. 292 366 IPR003613 GO:0004842|GO:0016567
Mtr5g2842 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 445 487 IPR000225 GO:0005515
Mtr5g2842 694 CDD RING-Ubox_PUB 297 339 IPR045210 -
Mtr5g2842 694 Gene3D - 546 692 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2842 Mtr-Chr5 37018048 37020395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2842 19 689 U-box Gene Family AT3G46510 36.982 4.18e-126 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2842 - - cam:101513231 1108.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2842 5 37018048 37020395 Mtr5g2842 5 37018048 37020395 ECH