Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2841 ATGAAGGGTTATGAACCAAGGTCAAGTTCCTCTTGTGCAGCCTGCAAATTTCTGAAAAGAAGATGCATACCAAATTGTATATTTGCGCCATACTTTCGCTCCGATGAGTGCAAGAAATTCGCGAAAGTTCACAAAGTATTTGGAGCAAGCAATGTGAGCAAGATTCTGATTGAAGTTCCAGAGGAACAAAGGGAAGAAACTGTGAATTCTTTGGCTTATGAAGCTGATGCAAGGCTTAGAGACCCTGTCTATGGATGCATAGGTGCTATAGCACTTTTGCAAAGGAAGATGGTTGAACTTCAACATGATCTTGCCATTGCAAAGGATCGCCTGGCTCGTTGCGCTGCGGCTGCTGCTACTCCTACTTCTTCTTTTTCCAATGATATGATGAATTCAAATGTTAGTTTGCCACCTTTTCCTGAGTTTTTCACTTGCAGTGACTTCAGTGATAATTTAAGTCACAGTTCTTCGTCTCAATCGTTTACTCGAAATGAAACTGTCGATGATTTCGTTCAAATTCCTTATATATTTTAA 534 0.4026 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEADARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARCAAAAATPTSSFSNDMMNSNVSLPPFPEFFTCSDFSDNLSHSSSSQSFTRNETVDDFVQIPYIF* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2841 177 Coils Coil 90 110 - -
Mtr5g2841 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Mtr5g2841 177 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Mtr5g2841 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 171 - -
Mtr5g2841 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2841 Mtr-Chr5 37006648 37007393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2841 1 111 AS2 family AT3G11090 80.180 3.16e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g2841 LOB 1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2841 - - gmx:100777635 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2841 5 37006648 37007393 Mtr5g2841 5 37006648 37007393 ECH