Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2840 ATGGATTCACCTCTTCATCATGTTCAAGAAACCAAACCCACCGCCAACACCGTTGTTACTACCACTCCAAGTGAAACATCTAACAACAGCACTGATAACAACAGTAATAACAGCAGCAGCAGTAACACTACCAACAACAATAAAAGTAACCGTAAATGCAAAGGTAAAGGTGGACCTGATAACAACAAATTCAGATACCGTGGTGTAAGACAACGTAGTTGGGGTAAATGGGTTGCTGAAATTCGTGAACCACGTAAACGTACTCGTAAATGGCTTGGTACTTTTTCAACTGCTGAAGATGCTGCTAAAGCTTATGATCGTGCTGCTATTATTCTCTATGGTTCTAGGGCTCAGCTTAATCTTCAACCTTCAGCTTCTTCTTCTTCTTCTCAAAACTCTTCATCTTCTTCTCGTAACTCTTCTTCTTCCAATTCCAATACTACTCTTCGTCCTTTACTTCCTCGTCCTTCTGGTTTCTCAGTTTACAATAATTTTGTCCCATTTGGTGTTTACAATAATTTTCATCATCATCACCAACCAGTTTTCTATAATAACAATAATGGTTTAGTTCATTTTCATCATAACCCTCATCAAGAAATGGTGCAAGTGCAAGTGCAACAGCATCAACAATATCATCATCAACAACTAAATCAAGATTTTGAACATGCAAGTGGTGATTCTGTTAAATCAATTACTTCGTACGGTCAGAATATTCATAGTAGTCATCATCATGATCAAGAACAACATGCACAAAATGTTTTGAATCAACAACATGCACAACATGTTTTGAATCAGCAACAGCAGCAGATGAATATTCAGAATTGTGTGGGGTCATCAAATTTTGGTTCTCAAAATAATAATGATATTGATGGAACAGTGGATCTGGATCCAGTGGGTGATTGTGTTGGTTCTCCAAATTCTATGTGGCCAGCTTTGACAAGTGAGGAAGATTATACAACTAGTTTATGGGATTATAATGATCCATTCTTCTTTGATTTTTGA 1002 0.3713 MDSPLHHVQETKPTANTVVTTTPSETSNNSTDNNSNNSSSSNTTNNNKSNRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAAKAYDRAAIILYGSRAQLNLQPSASSSSSQNSSSSSRNSSSSNSNTTLRPLLPRPSGFSVYNNFVPFGVYNNFHHHHQPVFYNNNNGLVHFHHNPHQEMVQVQVQQHQQYHHQQLNQDFEHASGDSVKSITSYGQNIHSSHHHDQEQHAQNVLNQQHAQHVLNQQQQQMNIQNCVGSSNFGSQNNNDIDGTVDLDPVGDCVGSPNSMWPALTSEEDYTTSLWDYNDPFFFDF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2840 333 Gene3D AP2/ERF domain 64 122 IPR036955 GO:0003700|GO:0006355
Mtr5g2840 333 MobiDBLite consensus disorder prediction 53 67 - -
Mtr5g2840 333 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ABI4 10 331 - -
Mtr5g2840 333 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Mtr5g2840 333 Pfam AP2 domain 65 113 IPR001471 GO:0003700|GO:0006355
Mtr5g2840 333 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 10 331 - -
Mtr5g2840 333 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Mtr5g2840 333 MobiDBLite consensus disorder prediction 1 68 - -
Mtr5g2840 333 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Mtr5g2840 333 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Mtr5g2840 333 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Mtr5g2840 333 MobiDBLite consensus disorder prediction 122 153 - -
Mtr5g2840 333 CDD AP2 65 122 IPR001471 GO:0003700|GO:0006355
Mtr5g2840 333 MobiDBLite consensus disorder prediction 9 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2840 Mtr-Chr5 36984666 36985901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2840 49 333 AP2-EREBP Transcription Factor Family AT2G40220 45.425 4.11e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr5g2840 AP2 2.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2840 K09286 - gmx:100779779 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2840 5 36984666 36985901 Mtr5g2840 5 36984666 36985901 ECH