Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2839 ATGTCAAACCCTAACATCAAAACATTCGACTGGACCTTCAACCCCGAACCCCAAGACGAACCACTCCAAGTCAAAGGCCACAAACTCCTCTTTTTCATTGCCATCTTCACCATCATCATCCTCTTCACAGCACTCTTCCTCTGCGCCCGCTGGCTCTTCCAAACCCACCACACTCCCCACGCGCCATCTCACACCTCCACATTCTCCTCCTCTCAATCCGAAGGACTCAACGCCGACGCCATCAAGAAGCTTCCTATCATACTACACCAATCCAATACTTCAAACCATGCATTGGAGGAAACGGAATGTTGCATTTGTTTAAGCACTTTTAGAGATGGTGAGAAGGTGAAAGTGTTACCGAGTTGTGATCATTATTTTCATTGTGAATGTGTTGATGCATGGCTTGTGAATCATTCTAGTTGTCCTTTGTGTAGAGCTTCTCTTAAGATTGATTTAGAGTTTCCTAAGATTTTGATTCAAGAACCACCTATTAGATATAATCTTGCTCTTTAA 513 0.4366 MSNPNIKTFDWTFNPEPQDEPLQVKGHKLLFFIAIFTIIILFTALFLCARWLFQTHHTPHAPSHTSTFSSSQSEGLNADAIKKLPIILHQSNTSNHALEETECCICLSTFRDGEKVKVLPSCDHYFHCECVDAWLVNHSSCPLCRASLKIDLEFPKILIQEPPIRYNLAL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2839 170 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 160 IPR044675 -
Mtr5g2839 170 PANTHER RING-H2 FINGER PROTEIN ATL66 3 160 - -
Mtr5g2839 170 SUPERFAMILY RING/U-box 92 153 - -
Mtr5g2839 170 Pfam Ring finger domain 102 145 IPR001841 -
Mtr5g2839 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 151 IPR013083 -
Mtr5g2839 170 SMART ring_2 103 144 IPR001841 -
Mtr5g2839 170 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2839 Mtr-Chr5 36970250 36971025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2839 18 151 C3H Transcription Factor Family AT3G11110 38.235 3.67e-25 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2839 - - gmx:100794927 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2188 3 35473392 35474169 Mtr5g2839 5 36970250 36971025 PCT