Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2836 ATGATCAGTGAAAATTCCAATTCAAATGGTGGTGACGAAAACGGTGATAAAGTGAAGGGTTCATGGAGTAAAACTGAAGATGAAACGTTGGTGAAACTGGTAAAGGAAAACGGTGCAAGAAACTGGTCGGTGATAAGCAACGAAATCCCCGGTCGTTCAGGAAAATCATGCCGTCTACGGTGGTGTAATCAGCTGAGTCCAACCGTTCAACACCTTCCTTTTACACCGGCGGAGGATAGCATCATCATTGAAGCACATGCAGTTCATGGAAACAAATGGGCGACGATTTCTCGTCTTCTTCCAGGTAGAACCGATAACGCGATAAAAAATCACTGGAATTCAACTCTCCGTCGTCGTCGCACGGCGGCTCCTGCAGCGGTTCCACCGGTTACAACGATTGTTCAAAGGGTTCCAACGGCGGTGCCGGTGACGGTGATTCCCACCGGTGTGATGATCGGAAAACGTGTAAATGAAAGTTACGACGGTGATTATTATAAGGATTTGTTGAGTCTCGGTACCCGTTATAAACGTCCTTGTGTTTTGGTCGAGAATAATAGCGGGTCACGTGGCTCACGTGAGGGTGAAGAAACGGTAACGGAAGATGATGACGCAGGGAATAAAGGTGTTAACGTGGTTAGGACGTCGTTAAGTTTGTTTCCACCTGGTTTTCTGAAAGAAGAAGAAGAGAGAAAAGAAAAACAAAAAGAAATTGAAGATTTTGAAGATAGCAATGATGATTTGAAGTTACTGAAAAATGAGAAATTGAGGTCGATGCTTCAGCGCATGATAGCAGAGGAAGTTAGGAATTATGTTGATAAGATGCGCCTTGGTGGTGGGTTAGCTCCTGATTCAACACTTCGAAAGTGA 867 0.4464 MISENSNSNGGDENGDKVKGSWSKTEDETLVKLVKENGARNWSVISNEIPGRSGKSCRLRWCNQLSPTVQHLPFTPAEDSIIIEAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRTAAPAAVPPVTTIVQRVPTAVPVTVIPTGVMIGKRVNESYDGDYYKDLLSLGTRYKRPCVLVENNSGSRGSREGEETVTEDDDAGNKGVNVVRTSLSLFPPGFLKEEEERKEKQKEIEDFEDSNDDLKLLKNEKLRSMLQRMIAEEVRNYVDKMRLGGGLAPDSTLRK* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2836 288 Gene3D - 18 70 - -
Mtr5g2836 288 CDD SANT 73 116 IPR001005 -
Mtr5g2836 288 PANTHER MYB PROTEIN-RELATED 8 184 - -
Mtr5g2836 288 MobiDBLite consensus disorder prediction 189 205 - -
Mtr5g2836 288 Gene3D - 73 119 - -
Mtr5g2836 288 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Mtr5g2836 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 120 IPR017930 -
Mtr5g2836 288 Coils Coil 223 253 - -
Mtr5g2836 288 PANTHER OS01G0850400 PROTEIN 8 184 - -
Mtr5g2836 288 MobiDBLite consensus disorder prediction 185 205 - -
Mtr5g2836 288 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g2836 288 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
Mtr5g2836 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 69 IPR017930 -
Mtr5g2836 288 SMART sant 70 118 IPR001005 -
Mtr5g2836 288 SMART sant 18 67 IPR001005 -
Mtr5g2836 288 CDD SANT 21 63 IPR001005 -
Mtr5g2836 288 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Mtr5g2836 288 Pfam Myb-like DNA-binding domain 73 115 IPR001005 -
Mtr5g2836 288 Pfam Myb-like DNA-binding domain 19 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2836 Mtr-Chr5 36945710 36947210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2836 15 135 MYB Transcription Factor Family AT3G50060 62.810 9.52e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2836 Myb_DNA-binding 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2836 - - mtr:MTR_5g082910 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2836 5 36945710 36947210 Mtr5g2836 5 36945710 36947210 ECH