Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2835 ATGGCGGCCGCGAACGCTCCGATCGCCATGAAAGAAGTCCTAACCTTACCGAGTGTTGGAATCAATGCACAATTCATCACATTCACGCATGTGACGATGGAATCAGACAAGTATATATGTGTTCGAGAAACGTCTCCACAGAATAGTGTTGTTATTGTTGATATGAGCATGCCAAATCAACCTTTGAGGAGGCCAATTACTGCGGATTCCGCTCTTATGAATCCTAATTCTAGAATCCTTGCTTTGAAAGCCCAACTCCAAGGGACTACACAGGATCACCTACAAATATTTAACATTGAATTGAAAACAAAGATGAAATCGCATCAGATGCCTGAGCAGGTAGTCTTTTGGAAGTGGATTAGCCCCAAAATGTTGGGCCTCGTGACACAAACCTCAGTATACCACTGGTCCATTGAAGGTGATTCTGAACCTGTTAAGGTATTTGAGAGAACAGCAAATTTGGCGAACAACCAGATAATCAATTATCGATGCGACCCTACAGAAAAATGGTTGGTCTTGATTGGTATCGCTCCTGGTTCCCCCGAGAGGGCACAATTGGTTAAAGGGAACATGCAGCTTTTCTCCGTGGATCAGCAGCGTAGTCAGGCTCTTGAAGCTCATGCTGCATCATTTGCCCAATTCAAAGTTCCTGGGAATGAAAATCCGTCTGTTTTGATTTCTTTTGCCTCAAAGACATTTAATGCTGGTCAAGTTATATCGAAGTTACATGTCATTGAACTGGGCGCACAGCCAGGGAAGCCATCATTTACAAAGAAACAAGCAGATCTCTTCTTCCCTCCAGATTTTGCTGATGACTTTCCAGTTGCAATGCAGATATCCCACAAATATAGTTTGATTTATGTGATCACCAAACTTGGGCTACTTTTTGTATATGATTTGGAGACAGCTACCGCTGTATATAGGAACAGGATTAGTCCAGATCCTATATTTTTGACATCAGAAGCCACATCAGCAGGAGGCTTTTATGCCATTAATAGGAGAGGCCAAGTTTTGTTGGCCACTGTCAATGAACAAACAATTGTGAATTTTGTCAGCGGTCAATTAAACAATTTGGAGCTAGCTGTTAGTCTTGCGAAAAGAGGGAATCTTCCTGGTGCTGAGAAGCTGGTTGTGGAGCGTTTTCATGAATTGTTTTCCCAAACAAAGTATAAAGAAGCAGCAGAGCTTGCTGCTGAATCTCCACAAGGAATCCTTCGGACCCCTGACACAGTTGCCAAATTTCAGAGTGTTCCCGTGCAAGCTGGTCAAACGCCGCCGCTGCTGCAGTATTTTGGAACACTTTTAACGAGAGGAAAGCTGAATGCCTTCGAATCATTAGAATTGTCTCGGTTGGTAGTGAACCAGAACAAGAAAAACCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGACTGTGGACAATGATCTTGCTTTAAAAATATACATCAAAGCCAGAGCTACTCCGAAAGTTGTTGCTGCTTTTGCTGAGAGGAGGGAGTTTGATAAGATTCTGGTCTACTCTAAGCAGGTTGGATACACACCTGACTACCTTTTCCTCTTGCAAACAATTCTCCGAACAGATCCTCAGGGTGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAATTGATTACAACACCATAACTGATCTGTTTCTTCAGAGAAACCTGATCCGTGAGGCAACAGCTTTTCTCCTGGATGTTTTAAAGCCAAATTTACCTGAACATGGATTCCTTCAAACAAAGGTGTTGGAGATAAATCTGGTCACTTTCCCTAATGTTGCTGATGCTATTTTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTGTTGCCCAGCTTTGTGAAAAAGCTGGCCTTTACGTGCGAGCTTTGCAACATTACACAGAGTTACCAGATATAAAACGTGTTATTGTTAATACACATGCTATTGAGCCTCAGTCACTTGTAGAATTTTTTGGTACTCTCTCACGAGAATGGGCATTAGAGTGCATGAAAGACTTGTTACTGGCCAATCTTAGGGGCAATTTACAGATTATTGTGCAGGTTGCCAAAGAATATTCTGAACAATTGAGCGTTGAAGGTTGCATTAAAATTTTTGAGCAGTTTAGGTCATATGAAGGGCTGTACTTTTTTCTTGGCTCATATTTGAGCTCCAGCGAGGACCCCGACATTCATTTCAAGTATATTGAGGCAGCAGCGAAGACTGGTCAAATCAAGGAGGTTGAGCGTGTGACAAGAGAATCCAATTTCTATGATGCCGAAAAAACAAAGAACTTCCTAATGGAGGCTAAGCTTCCAGATGCACGACCTTTAATCAATGTTTGTGATCGATTTGGGTTTGTTCCAGATCTGACACACTACCTATACACAAACAACATGCTTCGCTACATTGAAGGTTATGTTCAGAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTTGGGCAGCTGCTAGATGACGAGTGCCCTGAAGATTTTATCAAAGGTTTGATTCTTTCTGTTCGTTCCTTGCTGCCAGTGGAGCCCCTTGTGGAGGAGTGTGAGAAGAGGAATCGCCTTCGTTTGCTCACACAGTTTTTGGAACATCTCGTGAGTGAGGGAAGCCAGGATGTACATGTTCACAACGCCCTGGGTAAAATTATCATTGATAGCAACAACAACCCAGAAAATTTTCTCACAACCAACCCTTACTATGATTCTCGAGTTGTGGGCAAGTATTGTGAGAAACGCGACCCAACCTTGGCAGTTGTAGCTTACCGGCGAGGACAATGTGATGAAGAACTTATCAATGTCACCAGTAAAAATTCTTTGTTCAAACTGCAAGCAAGGTATGTCGTTGAGAGAATGGACGGCGATCTTTGGGATAAAGTTCTTAATCCTGATAATGAATATAGAAGGCAACTTATTGATCAGGTTGTATCTACTGCTTTGCCTGAAAGCTCAAGCCCTGAACAAGTTTCTGCAACTGTTAGGGCTTTCATGACAGCTGATCTGCCTCATGAATTGATTGAACTTCTCGAGAAGATTGTCCTTCAGAATTCTGCATTCAGTGGGAACCACAATTTGCAGAATCTTCTCATTTTGACAGCGATAAAGGCTGATTCATCCAGAGTTATGGATTATATCAATAGACTGGATAATTTTGACGGGCCTTCAGTTGGGGAAATGGCTGTAGAAGCACAGTTGTATGAGGAAGCATTTGCAATTTACAAGAAGTTCAACTTGAATGTTCAAGCAGTCAATGTGTTGCTTGATAATATTCGCAGCATTGATAGAGCTGTTGAGTTTGCTTTCAGAGTTGAAGAAGACGCTGTTTGGAGTCAGACGGCAAAGGCTCAACTCAGGGAAGGGCTTGTAAGTGATGCAATAGAGTCATTTATACGAGCAGATGATACTACACAATTTTTGGATGTTATCCGTGCTGCTGAAGATGCCAATGTTTACCATGACTTGGTTAAATACTTGTTAATGGTAAGACAGAAGGCAAAAGAACCAAAGGTTGACGGCGAGCTCATTTATGCATATGCAAAAATTGACAGGCTTAGTGACATTGAAGAGTTCATTCTGATGCCAAATGTTGCTAATTTGCAAACTGTTGGGGACCGGTTGTATGATGAAGCATTATACGAGGCTGCAAAAATCATATTTGCCTTTATATCTAACTGGGCCAAGTTGGCTATTACACTGGTCAAATTACAACAATTCCAAGGGGCAGTTGATGCAGCTAGGAAAGCTAACAGCTCAAAAACATGGAAGGAAGTTTGTTTTGCGTGTGTTGATGCAGAGGAGTTTCGTTTGGCCCAGATATGTGGACTCAACATTATTATTCAGGTGGATGACTTGGAAGAGGTCAGTGAATATTACCAAAATAGAGGTTACTTCAATGAGTTAATATCTCTCATGGAGAGTGGTTTAGGGTTAGAACGAGCACATATGGGCATCTTCACCGAGCTAGGAGTTCTTTATGCTAGATACCGCCCTGATAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATCCCAAAACTTATTAGAGCATGTGATGAACAACAACATTGGAAAGAATTGACCTTTTTGTATATCCAATATGATGAGTTTGATAATGCCGCAACTACCATCATGAACCATTCACCTGAAGCGTGGGATCACATGCAGTTCAAGGATGTTGCCGTCAAAGTTGCTAATGTTGAGTTGTATTACAAGGCTGTTCACTTCTATCTGGAAGAACATCCAGACCTCATCAATGATATTCTGAATGTCCTTGCACTTCGTGTGGACCACACACGTGTTGTTGACATCATGCGTAAGGCTGGTCACCTCCGTCTTGTGAAGCCATACATGGTTGCAGTTCAGAGCAGCAACGTTTCTGCTGTTAATGAAGCCCTGAATGAGATATATGTTGAGGAGGAAGATTATGATAGATTGCGGGAGTCAATTGATTTGCATGATAATTTCGATCAAATAGGCCTTGCACAAAAGATTGAAAAGCATGAGCTTCTTGAGATGAGGCGTGTTGCTGCTTATATTTACAAGAAGGCAGGAAGGTGGAAGCAGTCCATTGCTTTATCAAAGAAGGACAACCTTTACAAAGATGCCATGGAGACAGCTTCACAATCTGGCGAGCGTGAACTTGCCGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCATGTCTATTTGTTTGCTATGATTTAATACGAGCAGACGTTGTTCTTGAACTAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATACGTCTTGCAGTTTATCCGTGAATACACTGGCAAAGTTGATGAGCTAGTGAAAGACAGAATTGAAGCACAAAATGAAGTGAAGTCTAAAGAGAAAGAAGAAAAGGACGTAGTTGCACAGCAGAACATGTATGCTCAATTGTTACCTCTTGCTTTGCCTGCCCCACCAATGCCTGGAATGGGAGGACCAGGTTATGGAGGAAGCTACGGGCCTCCCCCTCCAGTGAGTGGAATGGGGATGCCCCAAATGCCTCCTTTTGGGATGCCACCCATGGGTAGCAGTTACTAA 5121 0.4245 MAAANAPIAMKEVLTLPSVGINAQFITFTHVTMESDKYICVRETSPQNSVVIVDMSMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIELKTKMKSHQMPEQVVFWKWISPKMLGLVTQTSVYHWSIEGDSEPVKVFERTANLANNQIINYRCDPTEKWLVLIGIAPGSPERAQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTFNAGQVISKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSAGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFSQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILVYSKQVGYTPDYLFLLQTILRTDPQGAVNFALMMSQMEGGSPIDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRVAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLSREWALECMKDLLLANLRGNLQIIVQVAKEYSEQLSVEGCIKIFEQFRSYEGLYFFLGSYLSSSEDPDIHFKYIEAAAKTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPENFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTSKNSLFKLQARYVVERMDGDLWDKVLNPDNEYRRQLIDQVVSTALPESSSPEQVSATVRAFMTADLPHELIELLEKIVLQNSAFSGNHNLQNLLILTAIKADSSRVMDYINRLDNFDGPSVGEMAVEAQLYEEAFAIYKKFNLNVQAVNVLLDNIRSIDRAVEFAFRVEEDAVWSQTAKAQLREGLVSDAIESFIRADDTTQFLDVIRAAEDANVYHDLVKYLLMVRQKAKEPKVDGELIYAYAKIDRLSDIEEFILMPNVANLQTVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRPDKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTFLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVAVKVANVELYYKAVHFYLEEHPDLINDILNVLALRVDHTRVVDIMRKAGHLRLVKPYMVAVQSSNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADVVLELAWMHNMIDFAFPYVLQFIREYTGKVDELVKDRIEAQNEVKSKEKEEKDVVAQQNMYAQLLPLALPAPPMPGMGGPGYGGSYGPPPPVSGMGMPQMPPFGMPPMGSSY* 1707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2835 1706 Coils Coil 1617 1644 - -
Mtr5g2835 1706 Coils Coil 1477 1497 - -
Mtr5g2835 1706 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1288 1434 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Clathrin-H-link 369 434 - -
Mtr5g2835 1706 PANTHER CLATHRIN HEAVY CHAIN 1 1705 - -
Mtr5g2835 1706 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 993 1138 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Clathrin, heavy-chain linker 344 367 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Mtr5g2835 1706 SMART CLH_2 1288 1434 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SMART CLH_2 700 842 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SMART CLH_2 1437 1596 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SMART CLH_2 847 986 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SMART CLH_2 993 1138 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SMART CLH_2 551 693 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SMART CLH_2 1142 1283 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SUPERFAMILY Clathrin heavy-chain terminal domain 5 343 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Mtr5g2835 1706 Gene3D Tetratricopeptide repeat domain 1197 1536 IPR011990 GO:0005515
Mtr5g2835 1706 Gene3D Tetratricopeptide repeat domain 457 788 IPR011990 GO:0005515
Mtr5g2835 1706 Gene3D Tetratricopeptide repeat domain 901 1055 IPR011990 GO:0005515
Mtr5g2835 1706 Gene3D Tetratricopeptide repeat domain 1056 1196 IPR011990 GO:0005515
Mtr5g2835 1706 PIRSF CHC 3 1692 IPR016341 GO:0016192|GO:0032051|GO:0071439
Mtr5g2835 1706 Gene3D - 1542 1638 - -
Mtr5g2835 1706 SUPERFAMILY ARM repeat 901 1066 IPR016024 -
Mtr5g2835 1706 Pfam Clathrin propeller repeat 20 55 IPR022365 -
Mtr5g2835 1706 Pfam Clathrin propeller repeat 154 197 IPR022365 -
Mtr5g2835 1706 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 700 842 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 847 986 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1437 1580 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SUPERFAMILY ARM repeat 1051 1195 IPR016024 -
Mtr5g2835 1706 SUPERFAMILY ARM repeat 457 793 IPR016024 -
Mtr5g2835 1706 Pfam Region in Clathrin and VPS 1146 1281 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Region in Clathrin and VPS 555 690 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Region in Clathrin and VPS 993 1131 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Region in Clathrin and VPS 1440 1579 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Region in Clathrin and VPS 850 983 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Region in Clathrin and VPS 1292 1431 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Pfam Region in Clathrin and VPS 701 840 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 1705 - -
Mtr5g2835 1706 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 551 697 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 Gene3D - 1 377 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Mtr5g2835 1706 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 1142 1283 IPR000547 GO:0006886|GO:0016192
Mtr5g2835 1706 SUPERFAMILY ARM repeat 345 500 IPR016024 -
Mtr5g2835 1706 SUPERFAMILY ARM repeat 1196 1531 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2835 Mtr-Chr5 36929015 36942437 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2835 K04646 - gmx:100786617 3130.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2178 3 35332053 35345030 Mtr5g2835 5 36929015 36942437 ECH
Mtr5g2835 5 36929015 36942437 Mtr5g2835 5 36929015 36942437 ECH
Mtr3g2952 3 43389317 43390540 Mtr5g2835 5 36929015 36942437 PCT