Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2830 ATGTGCAGTGGTTCAAAGAGTAAACTTTCTTCATCAGACTGTGCCATGGAGGATAAGCTTCAAATGGGTATCCACAACTCCTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAGAGGGAAGTAGATGAGAAGGATTTGGATGTGAATGAGGAAGGCTTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGAATCCGAAAAGAGGACTCCTCTTATGATTGCTTCCATGTTTGGAAGCACTAGAGTGGTCGAGTATATTGTTTCGGCAGGGAAGGTTGATGTCAACGGAGTTTGTGGTTCCGATATGGCCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAGTTTTTGCTCGAGGTTGTCAAGCTCTTGCTTGATGCCGGTGCAGATGCTGATTGTCTTGATGCCAGTGGAAATAAACCAGTTGATCTGATTGCACCGGCCTTTAATTCGTCGTCCAAATCGCGTAGGAAGGTATTGGAGATGTTTTTGAGAGGTGAGGTAAGTGCTGAACTCATCCAAGGGGAGATGGATGCTCCTTTCTCATTGAAAAAAGAAGGTGGTGATAAGAAAGAGTTTCCTATTGATATATCGTTGCCCGACATAAACAACGGTGTATATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCGAGGGCTTACTCTCACGATTGGACGGAGTGTCCCTTTGTTCATCCAGGTGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTACAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGGTCTTGCCAGAAAGGGGATTCTTGTGAGTATGCACATGGTGTTTTCGAGTCATGGCTACATCCCGCACAATACCGAACAAGGCTTTGCAAGGACGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAGACCCGAAGAGCTGCGCCCCGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCTAAGTCCTATTCAGCTAGTGGAATGGACATGACATCGATGAGTCCGCTGTCTCTAAGCTCCTCATCTTTGCCTATGTCCACTGTTTCAACGCCGCCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACATGTGGCAGAACAAATTAAACCTCACTCCACCATCGTTGCAGCTCCCAGGTAGCCGGTTGAAGAGTGCTTTGAGTGCAAGGGATCTTGATCTTGAGATGGAACTGCTTGGTCTGGATAGTCCTCGTCGTCAACAGCAGCAGCAACAACAACAACAATTGATTGAAGAGATTGCTAGAATCTCTTCCCCATCTTTCAGGAACAGCGAATTCAACAGGATTGCTGATTTGAATCCTACTAACCTTGATGACCTATTAGCATCAGCCGATCCCAATTTACTATCTCAATTACATGGACTTTCCATGCAACCTTCGACACCCACACAACAGATGCATTCTCCAAGTGCAATGCAGATGCGCCAAAACATGAACATGGGCCAAAACATGAACCACCTTCGTGCAAGTTATCCATCAAACAATATGCCTTCCTCTCCAGTGAGGAAGCCCTCACCATATGGATTTGATTCATCGGCTGCCGTAGCAGCTGCGGTGATGAATTCCAGGTCTGCTGCCTTCGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGTGGCGCTGCAACTCACCATCTTGGACTTTCTCCGCCTTCCAACCCTTCCTGCAGGGTGTCGTCCGGCCTTTCAGATTGGGGTTCCCCCACTGGGAAACTCGATTGGGGTGTAAACGGTGACGAGCTGAACAAGCTGAGGAAATCCGCTTCTTTTGGGTTCAGAAATAATGGACCAGCAGCACCAACTGCATCCCAACATGCTGAGCCTGATGTCTCATGGGTTAATTCATTGGTTAAGGATGTTCCATCTGATAATTCCGGCGTATATGGAGCCGAGAATATGCGGCAGCTGCAGCAATATGATCTGAGTCGAGACGTGCTTCCACCATGGGTGGAGCAGATGTACAAAGAGCAGGAGCAGATGGTAGCATGA 2052 0.4756 MCSGSKSKLSSSDCAMEDKLQMGIHNSSILLELSASDDFDAFKREVDEKDLDVNEEGFWYGRRIGSKKMESEKRTPLMIASMFGSTRVVEYIVSAGKVDVNGVCGSDMATALHCAVAGGSEFLLEVVKLLLDAGADADCLDASGNKPVDLIAPAFNSSSKSRRKVLEMFLRGEVSAELIQGEMDAPFSLKKEGGDKKEFPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHRPEELRPVYASTGSAMPSPKSYSASGMDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNMWQNKLNLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQQQQQQQLIEEIARISSPSFRNSEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMHSPSAMQMRQNMNMGQNMNHLRASYPSNNMPSSPVRKPSPYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATHHLGLSPPSNPSCRVSSGLSDWGSPTGKLDWGVNGDELNKLRKSASFGFRNNGPAAPTASQHAEPDVSWVNSLVKDVPSDNSGVYGAENMRQLQQYDLSRDVLPPWVEQMYKEQEQMVA* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2830 683 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 282 IPR000571 GO:0046872
Mtr5g2830 683 PANTHER UNKEMPT FAMILY MEMBER 18 682 IPR045234 -
Mtr5g2830 683 SMART ANK_2a 72 102 IPR002110 GO:0005515
Mtr5g2830 683 SMART ANK_2a 107 139 IPR002110 GO:0005515
Mtr5g2830 683 Gene3D - 24 173 IPR036770 -
Mtr5g2830 683 ProSiteProfiles Zinc finger C3H1-type profile. 257 284 IPR000571 GO:0046872
Mtr5g2830 683 ProSiteProfiles Ankyrin repeat region circular profile. 107 141 - -
Mtr5g2830 683 MobiDBLite consensus disorder prediction 323 379 - -
Mtr5g2830 683 Pfam Ankyrin repeats (3 copies) 70 138 IPR002110 GO:0005515
Mtr5g2830 683 MobiDBLite consensus disorder prediction 507 527 - -
Mtr5g2830 683 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 18 682 - -
Mtr5g2830 683 SMART c3hfinal6 292 315 IPR000571 GO:0046872
Mtr5g2830 683 SMART c3hfinal6 257 283 IPR000571 GO:0046872
Mtr5g2830 683 SUPERFAMILY Ankyrin repeat 27 159 IPR036770 -
Mtr5g2830 683 MobiDBLite consensus disorder prediction 327 379 - -
Mtr5g2830 683 ProSiteProfiles Ankyrin repeat profile. 107 142 IPR002110 GO:0005515
Mtr5g2830 683 MobiDBLite consensus disorder prediction 507 523 - -
Mtr5g2830 683 Gene3D - 258 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2830 Mtr-Chr5 36840615 36843715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2830 25 678 C2H2 Transcription Factor Family AT5G12850 40.331 4.98e-143 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr5g2830 Ank_2 1.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2830 - - gmx:100783376 994.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2173 3 35303503 35305235 Mtr5g2830 5 36840615 36843715 ECH
Mtr5g2830 5 36840615 36843715 Mtr5g2830 5 36840615 36843715 ECH