Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2817 ATGACTGACGGTCATCTCTTCAACAATATCACCCTCGGCGGCCGTGGCGGCACTAATCCGGGGCAGATAAAAATATATTCTGGGGGAATTTTATGGAAGAGACAGGGGGGTGGTAAATCAATTGAAGTTGACAAATCAGACATAGTGAGCGTGACATGGATGAAGGTTCCAAAGAGTAATCAACTTGGTGTTCAGATCAAAGATGGGTTGTTCTACAAATTCACTGGATTTCGTGATCAGGATGTTGTAAGTTTGACCAGTTTTTTCCAAAACACCTTTGGAATAACTGTAAAGGAGAAGCAACTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATTTAAATGGAAATATGCTGGCTTTCATGGTTGGCTCAAAGCAAGCTTTCGAAGTGCCTTTAGCAGACGTCTCACAAACTAACCTTCAAGGGAAAAATGATGTGATCTTGGAGTTCCATGTGGATGATACAACCGGAGCCAATGAGAAAGATTCGTTGATGGAGATAAGTTTCCATATACCGAATTCCAACACCCAGTTTGTTGGTGATGAAAATTGCCCCCCTGCTCAGGTTTTCCGTGATAAAATAATATCTGTGGCCGACGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACCTTTGATGGTATTGCAATCCTTACACCAAGGGGAAGATATAGTGTCGAGTTACACCTGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTAGTTCGACTATTTTTACTTCCTAAGTCTAATCAGCCACATACCTTCGTCGTTATTAGTCTCGACCCCCCTATTCGAAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTCGAAACTGATTATGTGGTTGAAAGTGAATTGGCATTAAGTGAAGATCTGTATAACTCTAAGTTCAAAGACAGATTGGAGTTGTCGTATAAGGGGCTTATCCATGAAGTGTTCACCACAGTATTACGTGGCTTGTCTGGGGCCAAAGTTACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTCTGAAAGCTGAAGATGGAATTTTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCCACTCTTATTACTCATGAAGAGATTGACTATGTGGAGTTTGAGCGACATGCTGCTGGTGGGTCAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGACCAAGAGCACCTCTTTCGTAATATTCAGAGAAACGAGTACCACAATTTGTATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAATTTAGGAGATGCCCAACCAACTACTGGTGTGGCTAAGGTTCTTGAGGGTGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGAAGATGAAAGTGACGAGGAGGATGAAGACTTTGTTGCCGAAAAGGACGATGAAGGGTCTCCTACTGATGATTCTGGGGCAGATGATTCTGATGCTAGCCAAAGTGGTGATGAGAAAGAGATACCTGCCAAAAAGGAACCAAAGAAGGATCTGTCTTCTAAGGCATCTGCTTCTACTTCTACTTCTACTTCTAAGAAGAAATCAAAAGATGCAGATGAAGATGGCAAAAAGAAAAAACAGAAGAAGAAAAAGGATCCAAATGCACCCAAGAGGGGAATGTCTGGATTCATGTTCTTTTCTCAAATGGAAAGAGAGAATATAAAGAAAGCTAATCCTGGGATTTCATTTACGGATGTGGCAAAGTTACTTGGAGAAAACTGGAAAAAAATGTCAGCTGAGGAGAAGGAGCCATACGAGGCAAAAGCTCGTGTTGATAAAAAACGTTATGAGGATGAGAAGATTGTCTACAATGCTCAACCACAACCGATGAATATTGATTCAGGAAATGAATCTGACAGTGCCTAA 1947 0.4124 MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKSIEVDKSDIVSVTWMKVPKSNQLGVQIKDGLFYKFTGFRDQDVVSLTSFFQNTFGITVKEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVPLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENCPPAQVFRDKIISVADVGAGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVESELALSEDLYNSKFKDRLELSYKGLIHEVFTTVLRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLITHEEIDYVEFERHAAGGSNMHYFDLLIRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQPTTGVAKVLEGDDDDAVDPHLERIRNEAGEDESDEEDEDFVAEKDDEGSPTDDSGADDSDASQSGDEKEIPAKKEPKKDLSSKASASTSTSTSKKKSKDADEDGKKKKQKKKKDPNAPKRGMSGFMFFSQMERENIKKANPGISFTDVAKLLGENWKKMSAEEKEPYEAKARVDKKRYEDEKIVYNAQPQPMNIDSGNESDSA* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2817 648 SMART Rtt106_2 348 441 IPR013719 -
Mtr5g2817 648 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Mtr5g2817 648 Gene3D - 1 93 IPR011993 -
Mtr5g2817 648 SUPERFAMILY HMG-box 554 639 IPR036910 -
Mtr5g2817 648 SMART hmgende2 562 632 IPR009071 -
Mtr5g2817 648 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Mtr5g2817 648 Gene3D - 339 448 IPR011993 -
Mtr5g2817 648 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 646 - -
Mtr5g2817 648 Gene3D High mobility group box domain 546 644 IPR036910 -
Mtr5g2817 648 MobiDBLite consensus disorder prediction 506 526 - -
Mtr5g2817 648 MobiDBLite consensus disorder prediction 474 499 - -
Mtr5g2817 648 CDD PH2_SSRP1-like 342 441 - -
Mtr5g2817 648 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Mtr5g2817 648 CDD PH1_SSRP1-like 207 340 - -
Mtr5g2817 648 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 563 631 IPR009071 -
Mtr5g2817 648 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 646 - -
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Mtr5g2817 648 MobiDBLite consensus disorder prediction 539 554 - -
Mtr5g2817 648 SUPERFAMILY PH domain-like 206 440 - -
Mtr5g2817 648 Pfam HMG (high mobility group) box 563 630 IPR009071 -
Mtr5g2817 648 Gene3D - 95 179 IPR038167 -
Mtr5g2817 648 MobiDBLite consensus disorder prediction 628 648 - -
Mtr5g2817 648 MobiDBLite consensus disorder prediction 634 648 - -
Mtr5g2817 648 Gene3D - 199 338 - -
Mtr5g2817 648 CDD HMGB-UBF_HMG-box 563 627 - -
Mtr5g2817 648 MobiDBLite consensus disorder prediction 469 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2817 Mtr-Chr5 36695405 36700932 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2817 559 626 ARID Transcription Factor Family AT1G04880 38.235 1.29e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mtr5g2817 POB3_N 2.1e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2817 K09272 - gmx:100805034 1077