Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2808 ATGTTTCTGTCTCTATTAGAGACGGAATCACTAAATCCGTCTCTAATTACTTTAGAGACGATGTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTGAAACACGTGAAGCAACAAAGAGTTTCATGGCGGAATGCAATGCTTTAAGAAAGATGAGGCACCGTAATCTTGTCAAAATCCTAACGTGTTGTTCAAGTGTTGATTATAATGGTGAAGAGTTCAAGGCTATTGTTTTTGAGTTAATGCCTAATGGGAATCTAGAAAAGTTTTTGCATGATAACGAAGGGTCTGAAAATCATAATCTCAACCTCACACAAAGGTTAGACATTGCTCTTGATGTAGCTCATGCACTTGATTATCTTCACAATGAGACAGAGCAAGCTGTAGTTCACTGTGATCTTAAGCCGAGCAACGTTCTTCTTGACGATGACTTTGTAGCCCACTTGGGAGACTTTGGCTTGGCTAGGCTCATTCTTGGAACCACAGAGCATTCAAGTAAAGATCAAGTTATTTTTTCTACAATTAAAGGAACTATAGGATATATTCCTCCTGGTAAAGCTCTTATCTTATATCCATTTTTAGTTAGCACCCTTAAGAAAATTGAGTACGGAGAAGGTGTTCCAGTATCACCACGGGGAGATATCTACAGCTTTGGGATTCTTCTACTAGAGATGTTCACTGCAAAGAGACCAACAAATAACAACTTTTCTGAGAGTCTAAGTCTACATGAATTCTGCAAAATGAAAATTTCAGAAGGAATCCTTGAGATAGTAGATTCACATTTGCTTTTACCATTTGCTGAAGATGAGACAGGGATTGTGGAAAACAAGATTAGGAATTGTTTGGTGATGTTTGCTAGAATCGGAGTTGCATGCTCTGACGAGTTTCCTGCTCATCGAATGTTGATAAAAGATGTTATCGTTAAGTTGCTTGAAATAAAAAAGAAGTTGCCTTGCTAG 960 0.3771 MFLSLLETESLNPSLITLETMFERPIVVKVLNLETREATKSFMAECNALRKMRHRNLVKILTCCSSVDYNGEEFKAIVFELMPNGNLEKFLHDNEGSENHNLNLTQRLDIALDVAHALDYLHNETEQAVVHCDLKPSNVLLDDDFVAHLGDFGLARLILGTTEHSSKDQVIFSTIKGTIGYIPPGKALILYPFLVSTLKKIEYGEGVPVSPRGDIYSFGILLLEMFTAKRPTNNNFSESLSLHEFCKMKISEGILEIVDSHLLLPFAEDETGIVENKIRNCLVMFARIGVACSDEFPAHRMLIKDVIVKLLEIKKKLPC* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2808 319 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Mtr5g2808 319 Gene3D Phosphorylase Kinase; domain 1 17 85 - -
Mtr5g2808 319 ProSiteProfiles Protein kinase domain profile. 1 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2808 319 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 21 319 - -
Mtr5g2808 319 SUPERFAMILY Protein kinase-like (PK-like) 24 308 IPR011009 -
Mtr5g2808 319 Pfam Protein kinase domain 24 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g2808 319 PANTHER LRR RECEPTOR-LIKE KINASE 21 319 - -
Mtr5g2808 319 PIRSF ILK 271 318 - -
Mtr5g2808 319 PIRSF ILK 20 254 - -
Mtr5g2808 319 Gene3D Transferase(Phosphotransferase) domain 1 86 318 - -
Mtr5g2808 319 SMART serkin_6 15 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2808 Mtr-Chr5 36608748 36609936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2808 23 316 Receptor kinase-like Gene Family AT3G47570 45.973 5.15e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Mtr5g2808 Pkinase 4.5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2808 - - mtr:MTR_1g029940 457.603