Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2798 ATGGATCCTCAGGAACCCAAACGCGTTGATCGAGAAATCTGGCAGTGCTTGGCCGGACCATCGTTCAAAATTCCGAAACTAAATTCTCAAGTTTTTTACTTTCCACTAGGTCACTTGGAACATGCCTGCCCTTCCCCTAACACTGAAGCACTCTCCCTTATCAATAGTTACCGTCCCATCATTCCGTGCGTCGTCTCCGACGTTGATCTCTTAGCTGATCTTCAAACTGATGAAGTCTTTGCAAAACTGATCCTAACTCCCATCACCAATGACAGTGTTCACGAACCTCAGGAGCCTGAGGTTCGTGAAAATGAACATGGTGGTGATAGGCTTGTTTTCTCTGGCAAGACTCTCACCCAGTCGGATGCTAATAATGGCGGTGCATTCTCCGTACCTTCTGAATGCGCGAAATTGATATTCCCGCCACTTGACCTAACATCCCCAATGCCGTCTCAGGTACTTCCGATCAAGGACATCCACAATTTTGTTTGGAACTTTCGCCACACCTACCGTGGGTCTCCCAAGCGACACCTAATCACCACTAAATGGAGTAAGTTCGTTGACACAAAGAAAATTATTGGCGGCGATTCCCTCGTTTTAATGAAAATTTCTAAAGATAAAGATAAGGATAAGATCTTCATCGGAATCCGCAGGCACAAGTTAAGTGCTGCTGCTAAGATAACGGAAAAATCCGTTATGGAGGCAGCAGAATTGGCGGATAAGAATATGACTTTTGAAGTTATTTATTATCCGACGGCTAGTCATTGGTGTAATTTTGTGGTGGATGCTGAAGCCGTAAAGAAAGCAATGCAGATTAATTGGCAATCTGGAATGAGAGTTAAACATTGCTTGAAGACTGATGAATCTTCAAAGAGAAGCTCAATTTTTCAAGGGACAGTATCTGCTCTATCTGATCCTTCTCATCATCCATGGCGTATGCTTCAGGTTAACTGGGATGAATCTGAAGTCTCTCAGAATCCAAGTCAAGTAAGTCCTTGGCAGATTGAACTTATTTCCCACACTCCAGCACTGCCTCTACAATTCCCCCCACAAAAAAAGCTTAGAATTGCTCATGTCTCTGCCTTATCAACTAACATAGAGAGACCCTCCATTCCAGAGATAGAGTTCAATTTCTTCAACCCAGCGTCAATGAATTGTGATGCTTTTCTTAATAGCATGCAGGGAACCAGACCTAATCTTTTTTCTGCCTCAACTTCTTCAACCTCTTTGAATGATAATGACAATGGTTTTGTTGAAGGTACCCACAACCTCAACACCAAAAAAGTTAATCCTCGTTCTATTAAGCTATTTGGTAAGACCATAGAGGTTGTTGAAAAGGATTTGCATGAGTCTCGTATCAATGGAGAGGATGGTTCCGATTAA 1383 0.4281 MDPQEPKRVDREIWQCLAGPSFKIPKLNSQVFYFPLGHLEHACPSPNTEALSLINSYRPIIPCVVSDVDLLADLQTDEVFAKLILTPITNDSVHEPQEPEVRENEHGGDRLVFSGKTLTQSDANNGGAFSVPSECAKLIFPPLDLTSPMPSQVLPIKDIHNFVWNFRHTYRGSPKRHLITTKWSKFVDTKKIIGGDSLVLMKISKDKDKDKIFIGIRRHKLSAAAKITEKSVMEAAELADKNMTFEVIYYPTASHWCNFVVDAEAVKKAMQINWQSGMRVKHCLKTDESSKRSSIFQGTVSALSDPSHHPWRMLQVNWDESEVSQNPSQVSPWQIELISHTPALPLQFPPQKKLRIAHVSALSTNIERPSIPEIEFNFFNPASMNCDAFLNSMQGTRPNLFSASTSSTSLNDNDNGFVEGTHNLNTKKVNPRSIKLFGKTIEVVEKDLHESRINGEDGSD* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2798 460 Gene3D - 112 220 IPR015300 -
Mtr5g2798 460 ProSiteProfiles B3 DNA-binding domain profile. 114 220 IPR003340 GO:0003677
Mtr5g2798 460 SUPERFAMILY DNA-binding pseudobarrel domain 113 207 IPR015300 -
Mtr5g2798 460 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 224 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g2798 460 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 226 413 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g2798 460 Pfam Auxin response factor 235 314 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr5g2798 460 SMART B3_2 113 220 IPR003340 GO:0003677
Mtr5g2798 460 Pfam B3 DNA binding domain 116 219 IPR003340 GO:0003677
Mtr5g2798 460 CDD B3_DNA 116 200 IPR003340 GO:0003677
Mtr5g2798 460 PANTHER AUXIN RESPONSE FACTOR 226 413 - -
Mtr5g2798 460 PANTHER AUXIN RESPONSE FACTOR 6 224 - -
Mtr5g2798 460 Gene3D - 274 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2798 Mtr-Chr5 36471334 36473175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2798 7 459 B3 DNA Binding Superfamily AT1G77850 35.072 2.43e-92 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g2798 B3 5.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2798 - - mtr:MTR_5g082140 922.539