Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2794 ATGGCGGCGAGTAAGCGCACAGTGTTGCAATTCTCTTCTTCCCAAACCTTATCCGGGAAGGTTCATCCTCTCGTTATCTTCAACATCTGTGATTGCTATGTCCGTCGTCCTGACCAAGCGGAGCGTGTCATCGGGACGCTCCTCGGCTCCGTTCTCCCCGACGGAACCGTCGATATCCGTAATTCATACGCCGTTCCGCACAATGAGTCCGTTGATCAGGTTGCTTTGGATATTGAGTACCACCATAATATGTTACTATCCCACCAAAAAGTCAATCCCAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACTGGTGGCAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTATCCAACCCAATACATTTGACTGTTGACACAGGATTTGCAGATGGAGAGGGCGCCATAAAAGCATATGTTTCAAACAATTTATCACTTGGAGATCAGCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTTGAAGCTGAGCGCATTGGATTTGATAATCTGAAGTCAACTTCTGTTGACAAAATCCCATCTGATTTAGAAGGGATGGAAGCATCAATGACACATCTGTTGGCCTTGGTTGATGACACCTACAAATACGTCGATGATGTTGTGGAAGGGCGTGTTGACCCAGACAACAAAATTGGGAAATGTATATCAGATGTTGTAGGTTCCCTTCCCAAAATACCCTCCTTGGCATTTGATAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTCATGGTATATTTATCTAGCATCACAAGGACACAGCTCGGCCTGGCTGAAAAATTGAACACCGCTGCTCAGATTCTGTGA 855 0.4456 MAASKRTVLQFSSSQTLSGKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNESVDQVALDIEYHHNMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVSNPIHLTVDTGFADGEGAIKAYVSNNLSLGDQQIAAQFQEIPLDLRMVEAERIGFDNLKSTSVDKIPSDLEGMEASMTHLLALVDDTYKYVDDVVEGRVDPDNKIGKCISDVVGSLPKIPSLAFDKLVNDSLQDHLLMVYLSSITRTQLGLAEKLNTAAQIL* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2794 284 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 120 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr5g2794 284 ProSiteProfiles MPN domain profile. 19 150 IPR037518 -
Mtr5g2794 284 SMART pad1_6 18 149 IPR000555 GO:0005515|GO:0008233|GO:0008237
Mtr5g2794 284 Gene3D Cytidine Deaminase, domain 2 6 185 - -
Mtr5g2794 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 15 283 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr5g2794 284 CDD MPN_eIF3f 20 277 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mtr5g2794 284 Pfam Maintenance of mitochondrial structure and function 171 277 IPR024969 -
Mtr5g2794 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 15 283 - -
Mtr5g2794 284 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 17 280 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2794 Mtr-Chr5 36394191 36398163 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2794 2 284 Eukaryotic Initiation Factors Gene Family AT2G39990 71.478 1.84e-149 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2794 K03249 - gmx:100786716 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2136 3 34935635 34941176 Mtr5g2794 5 36394191 36398163 ECH
Mtr5g2794 5 36394191 36398163 Mtr5g2794 5 36394191 36398163 ECH