Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2790 ATGCCTTCTTCATCTCCAACCTTGGTCTCAAAATGTACCATAACCCCAGACCAAAAATCCAACATAGCAAACCTTAAACTCTCTGTTTCAGACCTACCTATGTTGTCTTGTCACTACATCCAAAAAGGTTGTCTCTTCACAAAACCTTCAAACATTCCTTTCCATATTTTAATCCCTCTCCTAAAAAACTCTCTCTCCCGCACTCTCTCCCTCTTTCCACCTCTCGCCGGTCGTTTAACCACCGACTCTGAGGGCTATGTTTACCTGACTTGCAACGACGCCGGCGTCGATTTCATCACTGCAACTTCCACCTCACTTTACATCACTGACCTCTTATCAACAACCGATGTTCATGAATCATTCAAAGAGTTTTTCACTTTTGACCGGAAAGTCAGTTACACCGGTCATTTCTCTCCGATCATGGCCGTTCAAGTAACTGAACTCGCTGACGGAATTTTTATCGGCATCGCCGTTAACCACGCCGTCACTGACGGTACTTCCTTCTGGAATTTCTTCAATACATTCGCTCAAATCTGCAGAGGAGCAAACAAATGTATACGAAATTCACCAAGCTTCCGGAGAAATTCTGTTTTAATCTCCGACGCTGTTCTCCGGTTACCGGCAGAAGGTCCTGCTGTGACATTCAACGCTAATGCCCCGATTCGAGAAAGAATTTTCAGCTTCAGTCGCGAAGCAATTCAGAAACTGAAAGCAAGAGCTAACAACAAACCGTGTCCGGCAAAGTACAACACTATTGAATTGATGCAGAAACACATGAACGATCACTACAACAACAACAACAAAGAAAATGGGAAAGTGACGACGTTAATTGAGAACTGGTTTAAGAATAATGCTAAACCAGTTAACGGGACAGAAGTTGCTGAAACAGATACAGAAACGGTTGAGATTTCATCGTTTCAATCTCTATCCGCGTTGTTATGGCGTGCAATCACGCGCGCTAGGAAATTTCATCCATCCAAAACGACGACGTTTAGAATGGCGGTTAATTGTAGACACCGTATAGAACCGAAGCTAGAAGCGTTTTATTTTGGAAACGCGATTCAGAGTGTTCCAACTTATGCTTCTGCGGGAGATGTAATGTCTAGGGATATACGGTGGTGTGCGATGCAGCTGAATAAAAACGTGAAGGCACATGATAATGGTATGGTGAGGAGGTTTGTAGAGGATTGGGAGAATAATCCTAGGTGTTTTCCTTTGGGGAATAGTGATGGTGGTTCTATAACTATGGGTAGTTCTCCTAGGTTTCCGATGTATGACAATGATTTTGGTTGGGGGAAACCCTTGGTGGTTAGGAGTGGGAAAGCGAATAAATTTGACGGTAAGATTTCGGCGTTTCCAGGGAGAGATGGAAGTGGGACGGTTGATTTGGAGGTTGTATTGGCGCCAGAAACTATGGCGGCTCTTGAATTAGATACCGAGTTTATGACTTATGCGACGAGGCAGTTATAA 1470 0.4381 MPSSSPTLVSKCTITPDQKSNIANLKLSVSDLPMLSCHYIQKGCLFTKPSNIPFHILIPLLKNSLSRTLSLFPPLAGRLTTDSEGYVYLTCNDAGVDFITATSTSLYITDLLSTTDVHESFKEFFTFDRKVSYTGHFSPIMAVQVTELADGIFIGIAVNHAVTDGTSFWNFFNTFAQICRGANKCIRNSPSFRRNSVLISDAVLRLPAEGPAVTFNANAPIRERIFSFSREAIQKLKARANNKPCPAKYNTIELMQKHMNDHYNNNNKENGKVTTLIENWFKNNAKPVNGTEVAETDTETVEISSFQSLSALLWRAITRARKFHPSKTTTFRMAVNCRHRIEPKLEAFYFGNAIQSVPTYASAGDVMSRDIRWCAMQLNKNVKAHDNGMVRRFVEDWENNPRCFPLGNSDGGSITMGSSPRFPMYDNDFGWGKPLVVRSGKANKFDGKISAFPGRDGSGTVDLEVVLAPETMAALELDTEFMTYATRQL* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2790 489 Gene3D - 220 481 IPR023213 -
Mtr5g2790 489 Gene3D - 7 204 IPR023213 -
Mtr5g2790 489 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 484 - -
Mtr5g2790 489 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 6 484 - -
Mtr5g2790 489 Pfam Transferase family 7 482 - -
Mtr5g2790 489 SUPERFAMILY CoA-dependent acyltransferases 35 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2790 Mtr-Chr5 36361769 36363627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2790 7 476 Monolignol Biosynthesis Gene Families AT5G48930 25.577 1.05e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2790 - - gmx:100779616 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2135 3 34931768 34933425 Mtr5g2790 5 36361769 36363627 ECH
Mtr5g2790 5 36361769 36363627 Mtr5g2790 5 36361769 36363627 ECH
Mtr5g2790 5 36361769 36363627 Mtr3g2135 3 34931768 34933425 PCT