Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2785 ATGGATTTGGAAACCCTTTATTCTCCTTATTTTATGTTGGATACAAATTGGCTTGTTGAAGAGAGTTACCAAACAGAATGGAGTAGAGAAGATAACAAGAAATTTGAAAGTGCTCTTGCTATATATGATAAGGATACGCCAGATAGATGGCTTAAGGTTGCTGAGATGATTCCTGGTAAGACTGTGTTTGATGTGATTAAGCAGTATAGGGAATTGGTAGAAGATGTGAGTGAAATTGAGGCCGGAAATGTTCCGATTCCTGGCTATCTTGCTTCTTCTTTCACCTTTGAAGTTGTTGAAAAACAAAACTATGATGGAAACAGAAGAAGGCATGTCACTGTTAGAGGTTCTGATCATGAGAGGAAGAAAGGTGTTCCTTGGACTGAAGAGGAACATAGACGTTTTCTGATGGGACTTCTAAAGTATGGCAAAGGCGACTGGAGAAACATCTCGCGCAATTTCGTCGTGACAAAGACTCCAACACAAGTAGCAAGTCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTTCTGGAGGGAAAGATAAAAGAAGACCAAGCATTCATGATATCACAACTGTCACTCTCACAGAAACTTCTTCTCCATCAGAAAACAAGTCTTTATTAGTCAATGTGTCTCCTATGCAGCAGAAAATGGGTTGGAGTACTAGCCACTACAATGATGGATCACCACAAGGGCAGGATCTTTATGATTGCTCTTTCCATGAGGCTTATGCTAAGCTGAAAGTTTCCGGTTTCGCAACGGCTTCTAGAGACTTCAACAAAGGAGCTGTTTTTGGTATTCATGCACTGTAA 816 0.402 MDLETLYSPYFMLDTNWLVEESYQTEWSREDNKKFESALAIYDKDTPDRWLKVAEMIPGKTVFDVIKQYRELVEDVSEIEAGNVPIPGYLASSFTFEVVEKQNYDGNRRRHVTVRGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSSGGKDKRRPSIHDITTVTLTETSSPSENKSLLVNVSPMQQKMGWSTSHYNDGSPQGQDLYDCSFHEAYAKLKVSGFATASRDFNKGAVFGIHAL* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2785 271 CDD SANT 126 170 IPR001005 -
Mtr5g2785 271 Gene3D - 125 176 - -
Mtr5g2785 271 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 217 IPR043363 -
Mtr5g2785 271 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Mtr5g2785 271 CDD SANT 26 73 IPR001005 -
Mtr5g2785 271 SMART sant 23 75 IPR001005 -
Mtr5g2785 271 SMART sant 123 173 IPR001005 -
Mtr5g2785 271 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Mtr5g2785 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Mtr5g2785 271 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 217 - -
Mtr5g2785 271 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Mtr5g2785 271 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Mtr5g2785 271 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Mtr5g2785 271 Gene3D - 20 86 - -
Mtr5g2785 271 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2785 Mtr-Chr5 36287442 36289937 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g2785 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2785 - - cam:101492144 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1601 7 31330233 31333032 Mtr5g2785 5 36287442 36289937 ECH
Mtr1g1968 1 29292898 29296711 Mtr5g2785 5 36287442 36289937 ECH
Mtr5g2351 5 30879598 30882345 Mtr5g2785 5 36287442 36289937 ECH
Mtr3g1632 3 28324567 28327372 Mtr5g2785 5 36287442 36289937 ECH
Mtr5g2785 5 36287442 36289937 Mtr5g2785 5 36287442 36289937 ECH