Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2770 ATGCAGGTAAATGAGGACAAGTTTCATGTTGTTGTGGACATAGACAACAATGTATGTCACCGGAGTAATGAACGATGTTCTAACTCCGGTGACCGGTTAAATGAGGATCAAAGGTGTGAGATTGTAGGAGTGTCTGAAAAACAAAGAGGATCTTGTGATTCAGATGGTTCATCTGAATCAGAATGTTCTGTGGAGTTGGATCTGGATGGTGGTGGTGTAGTTTCTGATGTTAAGGTGCATTTGGATAAGGTGGAGAGGGATTGTAGGATTTGTCATCTTAGTATGGATATGACAAACCATGAATCTGGAATTCCTATGGAGCTTGGTTGTTTTTGCAAAAATGATTTGGCTGCTGCTCATAAGCATTGTGCTGAGGCTTGGTTCAAGATTAAAGGCAACAAAACTTGTGAAATCTGTGGATCAATTGCACACAACGTAGCCGGTGCTATTGAAGTTCAAATGACAGAACAGTTCAATGAATCGAGTGATCCCTCCATTGTACCTCCAACTGGACCTTCACCGCCATCAGAAACTCGAAATTTTTGGCAGGGACATCGGTTTTTGAATTTCCTTCTAGCATGTATGGTTTTCGCCTTTGTCATATCATGGCTTTTTCACTTTAATGTTCCCTCTTGA 636 0.4119 MQVNEDKFHVVVDIDNNVCHRSNERCSNSGDRLNEDQRCEIVGVSEKQRGSCDSDGSSESECSVELDLDGGGVVSDVKVHLDKVERDCRICHLSMDMTNHESGIPMELGCFCKNDLAAAHKHCAEAWFKIKGNKTCEICGSIAHNVAGAIEVQMTEQFNESSDPSIVPPTGPSPPSETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS* 212
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2770 211 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 9 211 - -
Mtr5g2770 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 148 IPR013083 -
Mtr5g2770 211 PANTHER ZINC FINGER, RING-CH-TYPE 9 211 - -
Mtr5g2770 211 CDD RING_CH-C4HC3_MARCH 88 140 - -
Mtr5g2770 211 SMART ringv_2 87 140 IPR011016 GO:0008270
Mtr5g2770 211 Pfam RING-variant domain 88 139 IPR011016 GO:0008270
Mtr5g2770 211 SUPERFAMILY RING/U-box 85 142 - -
Mtr5g2770 211 ProSiteProfiles Zinc finger RING-CH-type profile. 80 146 IPR011016 GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mtr5g2770 Mtr-Chr5 36130146 36132778 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2770 57 211 C3H Transcription Factor Family AT5G05830 64.968 5.21e-68 205
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2770 - - mtr:MTR_5g081560 426.787
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2118 3 34712602 34715779 Mtr5g2770 5 36130146 36132778 ECH
Mtr7g1547 7 30689131 30693039 Mtr5g2770 5 36130146 36132778 ECH
Mtr5g2770 5 36130146 36132778 Mtr5g2770 5 36130146 36132778 ECH