Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2755 ATGGCTCCTTCTTCTGATCATATCAATCATCTTTCTCATCCATGTATATATGGGGATTATGTGTCTTCACACCCAGAGAGAAAGTCTGGTTTCATGAAATGGCTCAGTAAGCTTTTCAAAGGTGGGTCCAATAGAGGAAGGAGTGGTCGTCATCATTATGATTCTGCAGAGGAAGGCATGTCTTGGCGTGCTCCATCTAGAGCTTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAGGATTTGGGCCATGCAATGTCACTTTCTTCAGCTGAAGATATGAAGAGACCAAATGCTCATCAAGGATATAGGTGGGGGGAAGAAAATAATGAAGATTATGGAAAGGCACTTCATGATAACTTTAACTCATCTGCACACCCTCCTTATGCACCTGCACCATTTTATCCCAATGAATATAGAAGACTATGCGGTGGCTGCAATCAGGAGATAATCTATGGAAATTGTTTAGGCTGCATGGATACTTATTTTCATCCAGACTGCTTTCGATGCCACTCTTGTCGTTCTCCCATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCATATCACAAATCTTGTTTTAAAGAGTTGACTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAACACAGCTCGCTGCTGTAGTTGTGAAAGATTAGAGCCACGGAATACGAAATACTATAGACTCGAGGACGGGCGAAGCTTGTGCTTAGAGTGCATGGAATCTGCTATAATGGATACTGGTGACTGTCAGCCTCTATACCATTCAATCAGAGATTATTATGAAGGAATGCATATGAGAATTGATCAGCAAGTTCCTATGCTTCTTGTTGAAAGAGAAGCGCTAAATGATGCTATTGTTGGAGAGAAGACTGGATTTCATCATTTGCCAGAAACAAGGGGTTTATGCCTTTCAGAAGAGCAAACTGTAACCAGTATACATAGAAGGCCAAGAATTGGAGGCCATAGACTTATTGGGATGAGAACTCAACCTCAAAAGCTGATAAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTACCAAGGTTACTAACGGGTGCTATACTAGCCCATGAGTTGATGCATGCATGGTTACGCCTTAAAGGTTATCGCAATCTCAGTCCTGAAGTAGAGGAAGGCATATGTCAGGTTCTGTCATATATGTGGCTTGAGTCAGAAGTTATGCCAACAACAAACTCACATTGCATGGCATCAACATCCACAGCTGTTGCTTCTTCCTCAAAGAAAGGTGCAAAGTCTCATGTTGAAAACAAATTGGGTGAATTCTTCAAGAATCAAATTGTCAATGATTCTTCTCCAGCTTATGGTGGTGGTTTTAGAGCTGCAAATGAAGCTGTTAATAAATATGGTCTACGTAGTACTCTCGAACATATTCGTTTGACTGGTTTTTTCCCTGTGTAA 1515 0.4106 MAPSSDHINHLSHPCIYGDYVSSHPERKSGFMKWLSKLFKGGSNRGRSGRHHYDSAEEGMSWRAPSRALDDRARAQKEKEDLGHAMSLSSAEDMKRPNAHQGYRWGEENNEDYGKALHDNFNSSAHPPYAPAPFYPNEYRRLCGGCNQEIIYGNCLGCMDTYFHPDCFRCHSCRSPITEREFSLSGKHPYHKSCFKELTHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTARCCSCERLEPRNTKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMHMRIDQQVPMLLVEREALNDAIVGEKTGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLIRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLSPEVEEGICQVLSYMWLESEVMPTTNSHCMASTSTAVASSSKKGAKSHVENKLGEFFKNQIVNDSSPAYGGGFRAANEAVNKYGLRSTLEHIRLTGFFPV* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2755 504 ProSiteProfiles LIM domain profile. 141 201 IPR001781 -
Mtr5g2755 504 PANTHER PROTEIN DA1-RELATED 2 21 504 IPR045218 -
Mtr5g2755 504 MobiDBLite consensus disorder prediction 47 86 - -
Mtr5g2755 504 CDD LIM_DA1 143 195 - -
Mtr5g2755 504 SMART lim_4 142 194 IPR001781 -
Mtr5g2755 504 Pfam Protein DA1 292 499 IPR022087 -
Mtr5g2755 504 Pfam LIM domain 143 196 IPR001781 -
Mtr5g2755 504 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 168 - -
Mtr5g2755 504 Gene3D Cysteine Rich Protein 130 200 - -
Mtr5g2755 504 MobiDBLite consensus disorder prediction 43 106 - -
Mtr5g2755 504 ProSitePatterns LIM zinc-binding domain signature. 143 177 IPR001781 -
Mtr5g2755 504 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 21 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2755 Mtr-Chr5 35940217 35944665 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr5g2755 DA1-like 4.8e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2755 - - gmx:100784976 915.99