Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2739 ATGGAGGGATCTTACTCTGATCAGTACTGGTTTTGGACGAAGAGAAGGCAAGTTCAAGCACCAATTGAATCATGGGAAGAAAAGGCTTTTGCAGAAGATGCAGCTAGGAATATACTGAATGGTAGCATGTGGCCACCAAGATTTTATTCATGTAACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGTGGTCACATGAATATTCATAGGAGAGATAGAGCTAGGCTCAAACAAAATCTTAGCCCTCAGAAGAACAATGATTTGATTAACTCATCACTAGGTAATCATTATTTTTCTGCAAAAATGTCATCAAAAATAGATTGTAATTATCATCAACTTAAACCTTGTTCTAGAAGAAGGTCCCTCTCACCTTCTAGAATTGTCTCAACTATTGTCAATGCTAGAGAAGACAATTTTTTAGATTGTAATGATTGTGTTGAAACAAGTTTGTCTTTAGGAATGTTTGGACAAAAATCATCAACTGTACTTCCTTGTGAGGAAAAAGGTATCAATTGTAAGAGATTGAAGACTAATAACATTTCTTCATTGCCTTCTGTTTTCCTCAAGACATGTTCAAATGATCATCATAGGTTCCTGGCTTTTCAACAACCTTCAGAAATTGTACTTGGACTCGATCATGGAATGGAAGATTTAGATCTTGAACTCAGGTTGGGGAAACAACAGAAAATTATTAAGTAG 705 0.3574 MEGSYSDQYWFWTKRRQVQAPIESWEEKAFAEDAARNILNGSMWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPQKNNDLINSSLGNHYFSAKMSSKIDCNYHQLKPCSRRRSLSPSRIVSTIVNAREDNFLDCNDCVETSLSLGMFGQKSSTVLPCEEKGINCKRLKTNNISSLPSVFLKTCSNDHHRFLAFQQPSEIVLGLDHGMEDLDLELRLGKQQKIIK* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2739 234 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Mtr5g2739 234 PANTHER OS07G0101800 PROTEIN 2 233 - -
Mtr5g2739 234 Pfam C2H2-type zinc finger 49 73 - -
Mtr5g2739 234 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 233 - -
Mtr5g2739 234 SUPERFAMILY beta-beta-alpha zinc fingers 46 75 IPR036236 -
Mtr5g2739 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Mtr5g2739 234 SMART c2h2final6 49 71 IPR013087 -
Mtr5g2739 234 Gene3D Classic Zinc Finger 42 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2739 Mtr-Chr5 35719543 35720247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2739 6 227 C2H2 Transcription Factor Family AT5G06070 34.914 1.21e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g2739 zf-C2H2_6 2.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2739 - - lja:Lj0g3v0352099.1 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2739 5 35719543 35720247 Mtr5g2739 5 35719543 35720247 ECH
Mtr3g2076 3 34211895 34213198 Mtr5g2739 5 35719543 35720247 PCT