Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2735 ATGTCGAATCGATGGTGGAGTGGAAGACAAACGGAGGCGAACCCGGTCGAAGGAGAGAACCGAAACGGTCCAACCCGGATCATTTTACGAAGAGAGTCACGAAGGGCAAGTAACGGTAGCGTTAACGGCAACGTTACCGGCGGTAACGTTACTCCAACGAGGAGTAACACCAGCAATACCGGCACCGGCAACAGCAACGGCCATGTTAACGACGAACTTGAGAACAGCAATGGCCGTTCCGGCGACCAGACCGCCAGAAGTGGACGCCGGCCACGTGGACGTCCGCCGGGGTCGAAGAACAAGCCAAAACCACCGCTGATGATCACAAAAGAAACTCCAAACGCTCTTAGCAGCGTTATCTTGGAAGTCGCCAACGGAGCCGACATCGCCCATAGCATTTCATCCTATGCTAACCGTCGCCACCGTGGTGTTTCAGTTCTCAGCGGCACTGGTTATGTTACCAACGTGACACTCCGGCAAGATAATGCTCCGGGAGGAATGATATCTCTTCAAGGGAGGTGTCACATTCTGTCACTCAGCGGTGCTTTTTTGCCTCCGCCTTCGCCGCCTGATGCTACTGGACTGACTGTTTATCTTGCTGGAGGTCAGGGGCAGGTTGTTGGAGGATTGGTTATCGGGTCGTTGATTGCGTCGGGGCCGGTGATGGTTGTTGCTGCAACTTTTGCTAATGCTACTTATGAAAGGTTGCCTTTGGAAGATGAAGATGAAGGAGATGAAGAGAATTTTCAAGAGGTTGATAACATTAATCTTGTTGTTAACAATGGTAATCATGTTGCTAATGGTGATGGTGGTTCTGGTTCTCTTTCTGGGTCAGCAAGTGGAAGTGGTGGTGGCGGTGGTGGTGGTGCAACTTCTCATGGATTAGGTGAATACAGTTTTAATCCAAGTATGATTCAAAATGGAAATGATAGTGGACATGGACACGGACACGATGTGTTCTGGCGTCCACATCCACCTCCATATTGA 987 0.5056 MSNRWWSGRQTEANPVEGENRNGPTRIILRRESRRASNGSVNGNVTGGNVTPTRSNTSNTGTGNSNGHVNDELENSNGRSGDQTARSGRRPRGRPPGSKNKPKPPLMITKETPNALSSVILEVANGADIAHSISSYANRRHRGVSVLSGTGYVTNVTLRQDNAPGGMISLQGRCHILSLSGAFLPPPSPPDATGLTVYLAGGQGQVVGGLVIGSLIASGPVMVVAATFANATYERLPLEDEDEGDEENFQEVDNINLVVNNGNHVANGDGGSGSLSGSASGSGGGGGGGATSHGLGEYSFNPSMIQNGNDSGHGHGHDVFWRPHPPPY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2735 328 Pfam Plants and Prokaryotes Conserved (PCC) domain 119 229 IPR005175 -
Mtr5g2735 328 ProSiteProfiles PPC domain profile profile. 113 251 IPR005175 -
Mtr5g2735 328 CDD DUF296 120 228 IPR005175 -
Mtr5g2735 328 Gene3D - 118 252 - -
Mtr5g2735 328 MobiDBLite consensus disorder prediction 1 18 - -
Mtr5g2735 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 327 - -
Mtr5g2735 328 MobiDBLite consensus disorder prediction 1 109 - -
Mtr5g2735 328 MobiDBLite consensus disorder prediction 296 310 - -
Mtr5g2735 328 SUPERFAMILY AF0104/ALDC/Ptd012-like 114 241 - -
Mtr5g2735 328 MobiDBLite consensus disorder prediction 266 328 - -
Mtr5g2735 328 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 51 327 IPR014476 GO:0003680
Mtr5g2735 328 MobiDBLite consensus disorder prediction 266 281 - -
Mtr5g2735 328 MobiDBLite consensus disorder prediction 35 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2735 Mtr-Chr5 35681270 35683325 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2735 89 244 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 68.590 1.29e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2735 - - cam:101507777 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2735 5 35681270 35683325 Mtr5g2735 5 35681270 35683325 ECH