Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2733 ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAGTGTGCTAGTGATTGTGTTTTTGCTCCATACTTCTCCTATGAACAAGCTTCAAGTCATTTTTCAGCAGTGCATAAGGTTTATGGGGCTAGTAATGTCTCTAGACTATTGTCACATCTTCCTATTCAAAATAGAAGTGATGCTGCCATCACTATATCTTATGAAGCCTTGGCTCGTATGCAAGATCCTATTTATGGTTGTGTTGCTCATATCTATGCATTGCAACATCAGGTTGCTAGCTTGCAAGAGGAGATAGATATTCTTGGAAGTGTAATGGCAAATTCAAGTGTTAGTGTTGTGAATTGTGGCAATGTTCAAGCACCAATGAACTCAAATAATGGAACACAATATTACCATAATCAAAGTTTTGAATCATACTTGGATATGGAGCTAATTCCTAATGCACACGGATTTCCAGAGCCTTTATACGGTGATTCCAACTCAAATCCATTAGAGAAGTTCTTATCAGGAATTGATCAAGAGGGTTTCTTGAACCACCCTTGGTTCAAGCATAATAATGGAGACATATGA 579 0.3851 MTGFGSSCGACKFLRRKCASDCVFAPYFSYEQASSHFSAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDILGSVMANSSVSVVNCGNVQAPMNSNNGTQYYHNQSFESYLDMELIPNAHGFPEPLYGDSNSNPLEKFLSGIDQEGFLNHPWFKHNNGDI* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2733 192 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Mtr5g2733 192 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Mtr5g2733 192 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 189 - -
Mtr5g2733 192 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2733 Mtr-Chr5 35643706 35645109 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2733 1 186 AS2 family AT5G06080 51.596 1.16e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr5g2733 LOB 2.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2733 K13945 - gmx:100809636 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2733 5 35643706 35645109 Mtr5g2733 5 35643706 35645109 ECH