Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2726 ATGCCAATATGTCCCGATTGTGACAGCGGCTTTCTGGAAGATGTCGAACAATCAACACATTCCGCCAATACTGTTGGTGGCCGTCGAATGAGGTTCCCTATGGCGGCGGCTATGTACATGATAGGCCATCGCAATAATAATTATAATCAAAATACTTTTCGACGCCACCGTAGAAACAATGTTAACGGTGGAGACATTTCTCCGTTTAACCCGATTATCATGATTCGTGGTGGTGGTGGTTCCTCTGAGGGGACGAGCCGTGAGCGTGAAGAGAATAACGAGTTTGAGCTTTTCTACGAAGATGGTGCCGGTTCTGGTCTTAGAGCATTACCTCCAAGGATGTCAGAGCTTATTCTAGGGTCTGGATTTGAAAGGGTGATGGAACAACTTTCTCATGTTGAAGCTAATCGTAGTGGAAACGAGGGACATAATCAACAACATTTACCGGCATTAAAATCCGCGGTGGAATTGTTACCGACGATTGAAATCAACGAGAGTCATATGAATGTAGAATCACATTGTGCCGTTTGTAAAGAGCCTTTTGAACTTGGAATTTCAGCTAGGGAAATGCCATGCAAACACATATACCATAATGAATGCATACTTCCATGGCTTGCAATTCAAAATTCTTGTCCCGTTTGTCGACATGAATTGCCTTGTGAATCACCACAAATTAACAATGAAATTTCCAATTCGAATGAAGACGAGAATGTTGGGTTGACAATTTGGAGGTTACCGGGTGGAGGGTTTGCCGTTGGAAGATTTTCTGGTGACGGAGGTGGGGGTGAGAATAGAATGGAGCATCCTATTGTTTACACAGAAGTGGATGGTGCATTTAACAATGTTGGAGAACCAAGAAGGATTTCATGGTCATTGACATCATCTAGAGGAGGGATAGGAAGAAGTAGAGGGGGTGCATTTCGTAGAATGTTGAGCAATTTGTTTGGATGTTTGAGAGGAGGTGGAGTTAGGAATCAACATTCTCCTTTTACTACTAGAGAGTTTCCTCAACCTATGACCATGAGAAATAATAGTGCATCTCATACCAATGAGAATCCTTCTCTACGTTCACGTAGGACTTGGTCTATGGATGCAAATGGTGGAAATAGACCATGGTAA 1119 0.429 MPICPDCDSGFLEDVEQSTHSANTVGGRRMRFPMAAAMYMIGHRNNNYNQNTFRRHRRNNVNGGDISPFNPIIMIRGGGGSSEGTSREREENNEFELFYEDGAGSGLRALPPRMSELILGSGFERVMEQLSHVEANRSGNEGHNQQHLPALKSAVELLPTIEINESHMNVESHCAVCKEPFELGISAREMPCKHIYHNECILPWLAIQNSCPVCRHELPCESPQINNEISNSNEDENVGLTIWRLPGGGFAVGRFSGDGGGGENRMEHPIVYTEVDGAFNNVGEPRRISWSLTSSRGGIGRSRGGAFRRMLSNLFGCLRGGGVRNQHSPFTTREFPQPMTMRNNSASHTNENPSLRSRRTWSMDANGGNRPW* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2726 372 Pfam Ring finger domain 173 215 IPR001841 -
Mtr5g2726 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 1 315 - -
Mtr5g2726 372 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Mtr5g2726 372 MobiDBLite consensus disorder prediction 327 364 - -
Mtr5g2726 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 315 - -
Mtr5g2726 372 SMART ring_2 174 214 IPR001841 -
Mtr5g2726 372 SUPERFAMILY RING/U-box 158 221 - -
Mtr5g2726 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 221 IPR013083 -
Mtr5g2726 372 CDD RING-H2_RNF126_like 174 215 - -
Mtr5g2726 372 MobiDBLite consensus disorder prediction 327 372 - -
Mtr5g2726 372 Pfam Protein of unknown function (DUF1117) 238 346 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2726 Mtr-Chr5 35584246 35585364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2726 122 221 C3H Transcription Factor Family AT5G01980 42.000 3.34e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2726 - K11982 gmx:100789228 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2066 3 34118066 34121820 Mtr5g2726 5 35584246 35585364 ECH
Mtr5g2726 5 35584246 35585364 Mtr5g2726 5 35584246 35585364 ECH