Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2722 ATGGAAGAAGGAAATGAATTAGTGATGGAGATGGTTCCTTATGAAAATGAAAATGAGATTATTTCATCAATGGAAGAAGGAAAGGAATTAGAGATGGAGTTGGAGATGGTTCCATATTATACCCTCACTGAGAGCTTCTATCGTAAGCTCAAGGAGCTTTTGGACCCTTCTGGATTCAATCTCATATATGATGTCCGAAAAACATCCCTTGACTTGTACCTGTTTTACTTGGAGGTCACGAAAAGAGGAGGTTATCACCAGGTTGATCAAGAAAAGAAATGGGGTGAAGTTGTTTCTGCACTAAAACTGGAAGGAAACAATGCAACCTTGTGTGATCAACTTGAAAAGCTCTATAAAGAACTTCTGTACAAATTTGAGACATTGTACTTCTACAGGTCTCCTGCAACTGGCAGCAATACAGGTCCAGTTGAAAGGAATCAAAACTCAACCACTAGTTTATCTCAATTAATGGACGATCAAGATTATCTGAAGGCGCGAAAGATATCCGAACACTACTCTAGTCAAATTACAGGAATTGGATATCAAGAATTTCAAGTGGTTCAACAAGCACCCTCAAAGAACAAAGAAAAGAAGAAACGGAGAGGTGCTCCAATAGGACAGAGTGGATATAATATATTCCTCAAGCAGGAATGTGCTCGACTTAAAGCTAATCATCCGGACGTAGGTGGAAGAAAAATCATAGACATGGCTATTGATGCTTGGAATAAGTTGTCAGACAATGAGAAACGGCCATATGAAGAGGCAAGCATGAAGATAAAGGAAGAAGTTAAAGAAGCACCCACAAATAACAAAGAAAAGAAGAAACATCGAGGTGTTCCAAGGGGACAGAAGAGTGCATATCAAATATTCCTCAAGCATGAATGCGCTAGACTGAAAGCTGATCATCAGTTTCAAGGTGACAGAAAACTCAAGGCTATTGATGCTTGGAAGATGATGTCCCCCTTGGAAAAACTGCCATATGAAGAGGAAAGCATGAAGATAAAGGAAGAAATTAAAGCAGCAATGATCCAAAAGAGCACTGAAGATCTTAATAGGGATGAAGAGAGACCTATTGTGTGTGGTGACTACTACTCTGTAACTTCACAACCTCTGTCAAACGACTCTTTTGGAAACAACGCAGCGGTGGACTTGACAGAAAAAGTATCCGAGGATCCCTTTTTCCCAGGTGATTTGAATGATCATCATTTGTTAGATTTTCCAAGCGGGGAACCCAAATGA 1239 0.3979 MEEGNELVMEMVPYENENEIISSMEEGKELEMELEMVPYYTLTESFYRKLKELLDPSGFNLIYDVRKTSLDLYLFYLEVTKRGGYHQVDQEKKWGEVVSALKLEGNNATLCDQLEKLYKELLYKFETLYFYRSPATGSNTGPVERNQNSTTSLSQLMDDQDYLKARKISEHYSSQITGIGYQEFQVVQQAPSKNKEKKKRRGAPIGQSGYNIFLKQECARLKANHPDVGGRKIIDMAIDAWNKLSDNEKRPYEEASMKIKEEVKEAPTNNKEKKKHRGVPRGQKSAYQIFLKHECARLKADHQFQGDRKLKAIDAWKMMSPLEKLPYEEESMKIKEEIKAAMIQKSTEDLNRDEERPIVCGDYYSVTSQPLSNDSFGNNAAVDLTEKVSEDPFFPGDLNDHHLLDFPSGEPK* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2722 412 SMART hmgende2 279 347 IPR009071 -
Mtr5g2722 412 SMART hmgende2 202 272 IPR009071 -
Mtr5g2722 412 SUPERFAMILY HMG-box 193 263 IPR036910 -
Mtr5g2722 412 CDD ARID 44 126 - -
Mtr5g2722 412 SUPERFAMILY ARID-like 44 131 IPR036431 GO:0003677
Mtr5g2722 412 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 203 271 IPR009071 -
Mtr5g2722 412 Gene3D High mobility group box domain 268 344 IPR036910 -
Mtr5g2722 412 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 262 394 - -
Mtr5g2722 412 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 1 261 - -
Mtr5g2722 412 Pfam HMG (high mobility group) box 208 267 IPR009071 -
Mtr5g2722 412 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 1 261 - -
Mtr5g2722 412 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 262 394 - -
Mtr5g2722 412 ProSiteProfiles ARID domain profile. 33 130 IPR001606 GO:0003677
Mtr5g2722 412 CDD HMGB-UBF_HMG-box 280 342 - -
Mtr5g2722 412 Gene3D - 24 146 IPR036431 GO:0003677
Mtr5g2722 412 Pfam ARID/BRIGHT DNA binding domain 44 126 IPR001606 GO:0003677
Mtr5g2722 412 CDD HMGB-UBF_HMG-box 208 262 - -
Mtr5g2722 412 SMART bright_3 41 131 IPR001606 GO:0003677
Mtr5g2722 412 Gene3D High mobility group box domain 186 267 IPR036910 -
Mtr5g2722 412 Pfam HMG-box domain 280 343 IPR009071 -
Mtr5g2722 412 SMART ARID_2 37 126 - -
Mtr5g2722 412 SUPERFAMILY HMG-box 268 339 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2722 Mtr-Chr5 35451182 35455073 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2722 46 258 ARID Transcription Factor Family AT3G13350 24.901 1.32e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mtr5g2722 ARID 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2722 - - mtr:MTR_5g080030 801.971