Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2717 ATGACTAAGCTCAACATCACCACCATTTTCTCCTTCTTAGCCCTTCTCCTCACTTCAACCGAAGCCAGACTCCCCGGTGTCTACTCCGGCGGAGCATGGCAAACCGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCCGGAACAATGGGTGGAGCATGTGGTTATGGAAATCTGTATAGTCAAGGTTATGGTGTGAACACAGCAGCATTAAGCACAGCACTATTCAACAACGGTTTGAGTTGTGGCTCGTGTTTTGAGTTAAAGTGTTCCAATGATCCTAGTTGGTGCCACCCTGGAAGTCCTTCAATATTAGTAACTGCTACAAATTTTTGTCCACCAAATTTTGCTCAAGCAAGTGATAATGGAGGTTGGTGTAACCCTCCACGACCACACTTTGATCTTGCTATGCCTATGTTCCTCAAAATTGCTCAATATCGTGCTGGTATTGTTCCTGTTTCTTACCGCAGGGTACCATGCAGAAAACAAGGAGGAATAAGATACACAATCAACGGCTTTCGTTACTTCAACTTGGTTCTAATCACCAACGTTGCAGGTGCAGGTGATATAGTGAAGACTAGTGTTAAAGGTTCAAAAACTGGTTGGATGAGTATGAGTCGTAACTGGGGGCAAAATTGGCAATCAAATTCTGTTTTGGTTGGTCAATCACTTTCTTTTAGGGTTACATCAAGTGATAAACGTACTTCAACTTCTTGGAATATTGTTCCCTCTAATTGGCAATTTGGTCAAACTTTCACTGGCAAGAATTTTCGAGTCTAA 780 0.4385 MTKLNITTIFSFLALLLTSTEARLPGVYSGGAWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCSNDPSWCHPGSPSILVTATNFCPPNFAQASDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVPCRKQGGIRYTINGFRYFNLVLITNVAGAGDIVKTSVKGSKTGWMSMSRNWGQNWQSNSVLVGQSLSFRVTSSDKRTSTSWNIVPSNWQFGQTFTGKNFRV* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2717 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Mtr5g2717 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Mtr5g2717 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Mtr5g2717 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Mtr5g2717 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Mtr5g2717 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Mtr5g2717 259 PANTHER EXPANSIN-A15 8 258 IPR002963 GO:0009664
Mtr5g2717 259 Gene3D - 20 161 IPR036908 -
Mtr5g2717 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Mtr5g2717 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Mtr5g2717 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Mtr5g2717 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Mtr5g2717 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Mtr5g2717 259 SUPERFAMILY Barwin-like endoglucanases 12 183 IPR036908 -
Mtr5g2717 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Mtr5g2717 259 PANTHER EXPANSIN-A4 8 258 - -
Mtr5g2717 259 Gene3D - 166 257 IPR036749 -
Mtr5g2717 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Mtr5g2717 259 SMART dpbb_1 68 155 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2717 Mtr-Chr5 35403939 35405414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2717 15 259 Expansin Gene Family AT2G39700 86.531 4.70e-166 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2717 - - gmx:100803242 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1414 7 28760267 28763683 Mtr5g2717 5 35403939 35405414 ECH
Mtr2g3353 2 47597062 47598723 Mtr5g2717 5 35403939 35405414 ECH
Mtr4g1881 4 31994901 31997543 Mtr5g2717 5 35403939 35405414 ECH
Mtr5g2717 5 35403939 35405414 Mtr5g2717 5 35403939 35405414 ECH