Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2711 ATGCGGAGGAACAGTCCAGGTTACTACAGTCCTCCACGGAGAGGATACGGCGGTAGGGGTGGCGGTGGAGGTGGTGGTGGTAGGAGGGGATATGGTGGTGGTGGTGGAGGTGGTGGTAGACGTAGAGAAAGCAACAATGGAAGTCTTTTGGTGAGGAACATTCCTTTGGATTGTAGACCTGAGGAGCTGAGAGCGCCGTTCGAGCGATTTGGACCGGTTCGCGATGTTTACATACCGAAGGATTATTACTCTGGACAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATGCATATGAGGCCTCTGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGGGAAATATCTGTTGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGCGTCATAGGACTAGTAGGTCCAGAGGACCAGGAGGGAGCTATGGAGGGCAAAGGTCTTCCTACCACGGGCGTTCTCGATCTCGCTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGTTCTAGAAACCGCTATCGCTCAAGGTCCAGGTCCTTCTCTCCTGCCCCAAGAAGGCAAGGTGACTACTCTGTTTCTCCTAGAAGGCATGCAGAACGCCCTAGATCACCTAGAAGTCCTCCTAGAAGTCCTCCTGTGGAGCGAGATGCAGATCATAAACGCAGGTCGTATTCTCCTCTAGGTTATGGCAATGATGTTGATCAGAATCAAAGCAATGGATATGCTGAGAAATCTGTGTACAAATCTGAGGCGGATAGAGGCCCGTGGAAGTCATCAAGATCACCCCCAGGATCTAGATCTAGATCAAGATCTGTTGATTTGTCACCTAGACGTGGCAGATGA 861 0.5041 MRRNSPGYYSPPRRGYGGRGGGGGGGGRRGYGGGGGGGGRRRESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRNRYRSRSRSFSPAPRRQGDYSVSPRRHAERPRSPRSPPRSPPVERDADHKRRSYSPLGYGNDVDQNQSNGYAEKSVYKSEADRGPWKSSRSPPGSRSRSRSVDLSPRRGR* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2711 286 MobiDBLite consensus disorder prediction 235 250 - -
Mtr5g2711 286 MobiDBLite consensus disorder prediction 196 231 - -
Mtr5g2711 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Mtr5g2711 286 PANTHER OS02G0252100 PROTEIN 23 284 - -
Mtr5g2711 286 MobiDBLite consensus disorder prediction 126 286 - -
Mtr5g2711 286 MobiDBLite consensus disorder prediction 1 48 - -
Mtr5g2711 286 MobiDBLite consensus disorder prediction 143 192 - -
Mtr5g2711 286 SMART rrm1_1 48 121 IPR000504 GO:0003723
Mtr5g2711 286 SUPERFAMILY RNA-binding domain, RBD 43 152 IPR035979 GO:0003676
Mtr5g2711 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Mtr5g2711 286 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 23 284 - -
Mtr5g2711 286 Gene3D - 39 162 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2711 Mtr-Chr5 35356923 35361557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2711 28 96 Eukaryotic Initiation Factors Gene Family AT3G11400 37.681 6.37e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2711 K12900 - gmx:100804294 316.235