Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2702 ATGAGAAAGCCTTGTTGTGACAAAGAAAACATCAACAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTATATACAAGTTCATGGTGAAGGATGTTGGGGCTCCATTCCTAAGGCTGCTGGGTTGCATCGTTGTGGCAAAAGTTGTAGGCTAAGATGGTTAAACTACTTACGACCAGATATCAAACGTGGAATCTTTGCACAAGATGAAGAAGACCTCATCATCAAACTCCATGCCCTCCTTGGTAATAGGTGGGCACTCATAGCTGGAAGGTTGCCTGGACGTACAGATAATGAGGTGAAAAACTATTGGAATTCTCATATTCGTAGAAAGCTAATAAAAATGGGAATTGATCCAAATAATCACAAACTACACAAAGGCTTTCCTACAGTGGGCACATCATCATGTGTTGAGTCCATGAACAAAGAGAATAATAAACTCTCCATCAAGTCGTGTGATGCACCCATTAATAATGATGTTTCTTTCACAAAGAAAGATACTACATCAATAATTAATTCTTCATCCTCTTTGAATCTTGACTTAACCATTGCTTTACCTTCTCCAAATAGGATTGTTATACCTAATTGTGAGTCTCCTAAGACTAGGGATATGGATATTGATCTTAATTGTTAA 642 0.3785 MRKPCCDKENINKGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHKGFPTVGTSSCVESMNKENNKLSIKSCDAPINNDVSFTKKDTTSIINSSSSLNLDLTIALPSPNRIVIPNCESPKTRDMDIDLNC* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2702 213 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Mtr5g2702 213 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Mtr5g2702 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Mtr5g2702 213 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Mtr5g2702 213 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Mtr5g2702 213 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Mtr5g2702 213 PANTHER MYB TRANSCRIPTION FACTOR 2 209 - -
Mtr5g2702 213 CDD SANT 71 111 IPR001005 -
Mtr5g2702 213 SMART sant 65 113 IPR001005 -
Mtr5g2702 213 SMART sant 12 62 IPR001005 -
Mtr5g2702 213 CDD SANT 15 60 IPR001005 -
Mtr5g2702 213 Gene3D - 13 65 - -
Mtr5g2702 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Mtr5g2702 213 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 209 - -
Mtr5g2702 213 Gene3D - 68 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2702 Mtr-Chr5 35263894 35265664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2702 2 189 MYB Transcription Factor Family AT4G38620 52.195 1.65e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2702 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2702 K09422 - gmx:100306391 302.367