Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2696 ATGGCACTAGCCAACAACAACATTCTACATTGTGTTTTTGATGAGACTACTATGGAGATTAACTCTGTAATGTCTCATAAAAAATCTATGATTGAAGAAGAAGATGGTTCACAAAGCACTAATGGACTAAGCAATGATTCAGCTTCAGCTTCTGCCATTACAAATTCTCCTACTCTTTGCAGAAAAAGCCATGTTTATAACAACAATACAAGTTATGAACTTGAAGAAGAGTCTTTGATTAATTTCAAAGGCAATGATGAGTATTACAACAACCTCATGCAAGGTAGTGAATCATTGCTTAGCTTTCAGCATAGTTGGATGGTTTCCAATGAGAATAATTTGCAGCAATGGAATAATGCTAGTCCTAAAAGTACCACAAATTTGTGCATGGTGCAAGGTTTTAATAGCTTTGAAACTTCAAGTGGTAGCTATGGATCCATGTTCAATAGTGTAAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGATGGCTATACTCTGAACCAAATGTTCCTTGTGATGATGACGATGATGATGATAGCTTAATAAAAGAGTCGGAAACACATGAATCCGTCTTGAAGAAGCGATCTTCTATGGGGGGGAACATGCAGCCTACCAATGCCAAGAAGCCATGCACAGCTGCAAGTAAGAAAGAAAAACATAAGTCAAATCCATCCAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTGCCAAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAGAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTGCAAGTGAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTCAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAACAAGCAATTGATGCAATTCTTTCATCTCAAAGATGA 936 0.3814 MALANNNILHCVFDETTMEINSVMSHKKSMIEEEDGSQSTNGLSNDSASASAITNSPTLCRKSHVYNNNTSYELEEESLINFKGNDEYYNNLMQGSESLLSFQHSWMVSNENNLQQWNNASPKSTTNLCMVQGFNSFETSSGSYGSMFNSVKEKQNGESSCGWLYSEPNVPCDDDDDDDSLIKESETHESVLKKRSSMGGNMQPTNAKKPCTAASKKEKHKSNPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDAILSSQR* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2696 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 282 IPR036638 GO:0046983
Mtr5g2696 311 Pfam Helix-loop-helix DNA-binding domain 234 274 IPR011598 GO:0046983
Mtr5g2696 311 MobiDBLite consensus disorder prediction 187 236 - -
Mtr5g2696 311 SMART finulus 230 279 IPR011598 GO:0046983
Mtr5g2696 311 MobiDBLite consensus disorder prediction 194 210 - -
Mtr5g2696 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 273 IPR011598 GO:0046983
Mtr5g2696 311 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 309 - -
Mtr5g2696 311 MobiDBLite consensus disorder prediction 212 236 - -
Mtr5g2696 311 Gene3D - 217 281 IPR036638 GO:0046983
Mtr5g2696 311 CDD bHLH_AtIND_like 225 287 - -
Mtr5g2696 311 MobiDBLite consensus disorder prediction 35 50 - -
Mtr5g2696 311 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 309 - -
Mtr5g2696 311 MobiDBLite consensus disorder prediction 29 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2696 Mtr-Chr5 35185796 35187679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2696 130 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 54.497 4.81e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g2696 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2696 - - gmx:106795957 383.645