Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2689 ATGCCTTTGTTTGTCTGTGGACAAAAGCAAGTGTATATGGAGAAGTGTAAGACTAGAGGTGTGAGAAAAGGTGCATGGACATATGAGGAAGACAAGCTACTCAAGGCTTGTATGCAGAAGTATGGTGAAGGAAAATGGCATTTAGTTCCACAAAGAGCAGGATTGAATAGGTGCCGGAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCCACCATCAATAGAGAGAGTTTTTCTGAGGATGAAGTTGATATGATTTTAAGGTTACACAAGCTTTTAGGGAACAGATGGTCATTGATTGCTGCAAGACTCCCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACACATTTACGCAAGAAGATGGTTTCAAGAAAAGAAGAAAAGAAAGAAAATGAGAAACCTAAAGAAAGCATGCAAACTCATGAAGTTATTAAACCTCAACCTCGAACTTTTTCATCTCATTCACCATGGTTGAATGGGAAATATAATAATTTTGTGACACCAATAGTAACTGTTTCAACAAATGATGGTAATGTTGCAAAAGATAGTGAAGTAGATACTATTCTACCAATTAATGGTGATGGTGATAGTGCTGCACAACCATATCTTGAAAATCCAACACTGTCTTCCATGTGGTGGGAGAGTTTGTTGAACGTGAGCAATGACAAAATTGGATCATGCTCTTTACTATTACCAGAGGAATATTCCAAATTAAATGTTGAGAACTTTCTTGCTGAAGGACCCAGTACTGTCGGTGATTTCTCCTGGGATTCTACCATTTGTGAATTTGACTCTCTTTTAGATGATATCTTAAATTAG 831 0.3718 MPLFVCGQKQVYMEKCKTRGVRKGAWTYEEDKLLKACMQKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINRESFSEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKMVSRKEEKKENEKPKESMQTHEVIKPQPRTFSSHSPWLNGKYNNFVTPIVTVSTNDGNVAKDSEVDTILPINGDGDSAAQPYLENPTLSSMWWESLLNVSNDKIGSCSLLLPEEYSKLNVENFLAEGPSTVGDFSWDSTICEFDSLLDDILN* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2689 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 18 169 - -
Mtr5g2689 276 SMART sant 75 123 IPR001005 -
Mtr5g2689 276 SMART sant 22 72 IPR001005 -
Mtr5g2689 276 MobiDBLite consensus disorder prediction 124 155 - -
Mtr5g2689 276 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 18 169 - -
Mtr5g2689 276 SUPERFAMILY Homeodomain-like 20 117 IPR009057 -
Mtr5g2689 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Mtr5g2689 276 MobiDBLite consensus disorder prediction 127 146 - -
Mtr5g2689 276 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Mtr5g2689 276 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Mtr5g2689 276 Pfam Myb-like DNA-binding domain 76 121 IPR001005 -
Mtr5g2689 276 Gene3D - 23 75 - -
Mtr5g2689 276 Gene3D - 77 150 - -
Mtr5g2689 276 CDD SANT 78 121 IPR001005 -
Mtr5g2689 276 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Mtr5g2689 276 CDD SANT 25 70 IPR001005 -
Mtr5g2689 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2689 Mtr-Chr5 35062067 35064401 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2689 19 221 MYB Transcription Factor Family AT1G66370 51.570 2.33e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2689 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2689 - K16166 mtr:MTR_5g078860 309.686