Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2688 ATGTTGTGCAATACCCCTAGGGCTCACAAACACCCAACCCAACTACCTAGAGACCTGATACCAATCCGGGAGGATAGCAGGGCAAACAAGAAAGAGATGCGCGGAAGATTCGGAAGGCGCCTCAAAAAAGACACAACCAAGATCCCTCTCAGGCAAGGGAACACCACGCCTATGGAGGTTAAACCTAGTCGGGATCCTATCAAGAATCAGTTGCCAAGAGAAGACAACAACCTTAGACAGGGCCCACGACTACCACACCCTAGAGTAATTAACACTCAAGAATTAACACCAGCTTTGTTTGATCTTGACACTGATATTGACACCGTCTTCCCAGACTCCATTATCAACCTCTGTGGAAGATTGATTGTATTTTTGTTACACTTGGCAGGATTGAATAGATGCCGAAAAAGTTGTAGATTGAGGTGGTTAAATTATTTATGCCCCAACATCAAAAGGGAAAGCTTTGCTGAGGATGAAGTTGATCTGATCCTAAGGTTACACAAACTTCTAGGGAATAGATGGTCATTGATTGCTGCAAGGCTTCCTGGTAGAACAGCGAATGATGTGAAAAACTATTGGCACACAAATTTGCGGAAGAAGCTTGCTTTAGAAAAAGAAAAGAAAGAAAAAGAGAAACATAAGGAAACTATGAAAACACATGAAGTTATTAAACCTCAACCTCGAATTTTTTCAACTCATTCACCATGGTTGAACAAGAAGCAAAATAATTTTGTTGCACAACCAGTACTGGCTTCAAATAAAGATGGTAATGTTCCCAGAGATTCTAATGCCTCATTAGGTACTACGGTTTCAAATCAAGTTGGTAGAGATTATGTTTCCTCTTCACAACCAAGTATAGATAATGTTGCAATACTTTGTTCAAAAAAAGATAATGTTGCAATACCATGTGCAATGTTGACCGATAATTTGTGGAACTTGGGGGAGCCAGTAGACAGTGAGAAAATTGGCTCATGCTCTTCATTACAAGAGGAGTACTTTAGTATGGAGTTTTCAACCATTGATTACTCCTTTTGGGATTCCAACCTTTGTGATTTCATTTATCTTTGA 1068 0.3998 MLCNTPRAHKHPTQLPRDLIPIREDSRANKKEMRGRFGRRLKKDTTKIPLRQGNTTPMEVKPSRDPIKNQLPREDNNLRQGPRLPHPRVINTQELTPALFDLDTDIDTVFPDSIINLCGRLIVFLLHLAGLNRCRKSCRLRWLNYLCPNIKRESFAEDEVDLILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTNLRKKLALEKEKKEKEKHKETMKTHEVIKPQPRIFSTHSPWLNKKQNNFVAQPVLASNKDGNVPRDSNASLGTTVSNQVGRDYVSSSQPSIDNVAILCSKKDNVAIPCAMLTDNLWNLGEPVDSEKIGSCSSLQEEYFSMEFSTIDYSFWDSNLCDFIYL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2688 355 Pfam Myb-like DNA-binding domain 152 196 IPR001005 -
Mtr5g2688 355 Gene3D - 114 151 - -
Mtr5g2688 355 SMART sant 151 199 IPR001005 -
Mtr5g2688 355 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 128 247 - -
Mtr5g2688 355 Coils Coil 194 223 - -
Mtr5g2688 355 ProSiteProfiles Myb-like domain profile. 147 197 IPR001005 -
Mtr5g2688 355 SUPERFAMILY Homeodomain-like 132 204 IPR009057 -
Mtr5g2688 355 CDD SANT 157 197 IPR001005 -
Mtr5g2688 355 Gene3D - 153 225 - -
Mtr5g2688 355 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 128 247 - -
Mtr5g2688 355 MobiDBLite consensus disorder prediction 49 87 - -
Mtr5g2688 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 148 201 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2688 Mtr-Chr5 35055799 35058705 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2688 129 255 MYB Transcription Factor Family AT1G66370 52.027 8.84e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g2688 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2688 - K16166 mtr:MTR_7g017260 263.848