Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2687 ATGTGTATGGAAAATAGCAGAATCAAGAGAAAACGTACGTGGACATCTGAGGAAGACAAGTTACTCAAAGCTTATATTAACAAGTATGGTGAAGGAAAATGGCATTTAATTCCTAAAAGAGCAGGACTGAATAGGTGCAGAAAAAGTTGTAGATTGAGATGGTTAAATTATTTAAACCCAACCATCAACAGAGAAATCTTTTCTGAGGATGAAGCTGATATGATCCTTAGGTTACACAACCTCTTGGGGAATAGATGGACGTTGATTGCTGCAAGACTTCAAGGTAGAACAGCTAATGATGTGAAAAACTATTGGAACACTCATTTGAAGAATAAGGATGTTTCAAGAGCAAAAGAAAAGAAAGAAAAAGATAACCCTAAGGAAATTATTAAAGCTCATGAAGTTATTAAACCTCGTCCATTAACTTTTTCAACTCATTCACCTTGGTTGAATGGGAAACATAATTTTGTGACACATCCAATATTGGGTAACGTTCCTAGATATCATGATGCCTCATCAGACACTATGGTTCCTGATCAAATTGGTAGAGATTGTGCTTCTGATTCACAACCAAGACTAGGTAATGCCCCAGTATTATGTGTGCAATGTGGTTGCTCTTCATTACAAGAGCAGAACTATAAGGTTTTTAAATGGTTATGA 660 0.3591 MCMENSRIKRKRTWTSEEDKLLKAYINKYGEGKWHLIPKRAGLNRCRKSCRLRWLNYLNPTINREIFSEDEADMILRLHNLLGNRWTLIAARLQGRTANDVKNYWNTHLKNKDVSRAKEKKEKDNPKEIIKAHEVIKPRPLTFSTHSPWLNGKHNFVTHPILGNVPRYHDASSDTMVPDQIGRDCASDSQPRLGNAPVLCVQCGCSSLQEQNYKVFKWL* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2687 219 CDD SANT 67 109 IPR001005 -
Mtr5g2687 219 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Mtr5g2687 219 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 9 155 - -
Mtr5g2687 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Mtr5g2687 219 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Mtr5g2687 219 Gene3D - 11 63 - -
Mtr5g2687 219 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Mtr5g2687 219 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Mtr5g2687 219 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Mtr5g2687 219 Gene3D - 66 135 - -
Mtr5g2687 219 SMART sant 10 60 IPR001005 -
Mtr5g2687 219 SMART sant 63 111 IPR001005 -
Mtr5g2687 219 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 9 155 - -
Mtr5g2687 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 62 IPR017930 -
Mtr5g2687 219 CDD SANT 13 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2687 Mtr-Chr5 35038541 35040755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2687 4 144 MYB Transcription Factor Family AT1G66370 58.904 1.54e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2687 Myb_DNA-binding 3.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2687 - K16166 mtr:MTR_5g078930 464.151