Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2686 ATGGAGAAGACTAGAAGTTTGAGAAAAGGTGCATGGACATATGAGGAAGACAAGCTACTCAAGGCTTGTATACAGAAGTATGGTGAAGGAAAATGGCATTTAGTTTCTCAAAGAGCAGGATTGAATAGATGTCGAAAAAGTTGTAGATTGAGGTGGGTAAATTATTTATGCCCCAACATCAAAAGGGAAAGCTTTGCTGAGGATGAAGTTGATATGATCCTAAGGTTACACAAACTTCTAGGGAATAGATGGTCATTGATTGCTGCAAGGCTTCCTGGTAGAACTGCTAATGATGTGAAAAACTTTTGGCACACACATTTGCGGAAGAAGGTTGTTTCAGAAACAAAAGAAAAGAAAGAAAAAGAGAAACCTAAGGAAACAATGAAAGCTCATGAAGTTATTAAACCCCAACCTTGA 417 0.3789 MEKTRSLRKGAWTYEEDKLLKACIQKYGEGKWHLVSQRAGLNRCRKSCRLRWVNYLCPNIKRESFAEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNFWHTHLRKKVVSETKEKKEKEKPKETMKAHEVIKPQP* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2686 138 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Mtr5g2686 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Mtr5g2686 138 CDD SANT 67 107 IPR001005 -
Mtr5g2686 138 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 128 - -
Mtr5g2686 138 CDD SANT 11 56 IPR001005 -
Mtr5g2686 138 SMART sant 61 109 IPR001005 -
Mtr5g2686 138 SMART sant 8 58 IPR001005 -
Mtr5g2686 138 Gene3D - 64 135 - -
Mtr5g2686 138 Gene3D - 1 62 - -
Mtr5g2686 138 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Mtr5g2686 138 MobiDBLite consensus disorder prediction 113 138 - -
Mtr5g2686 138 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Mtr5g2686 138 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 111 IPR017930 -
Mtr5g2686 138 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 128 - -
Mtr5g2686 138 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Mtr5g2686 138 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2686 Mtr-Chr5 35023580 35025933 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2686 2 138 MYB Transcription Factor Family AT1G66370 61.268 6.23e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2686 Myb_DNA-binding 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2686 - K09422 mtr:MTR_5g078860 226.483