Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2685 ATGTATGTATGTATGTATAGATGGTCTTTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAATGATGTGAAGAATTATTGGCACACAAATTTGCGCAAAAAAGTGATTCCAAGAAAAGAAGAAAAGGAAGAAAAAGAGAAATCTAAAGAAAGCATGATCAAATCTCATGAAGTTATCAAGCCTCGACCTCGAACTTTTTCAACTCATTCACTATGGTTGAAGAAGAAACATAATTTCGTGAGTAATGGTAGTGCAACAAAACTAGTGATTTCAAGTGAAGATGGCAATGTTCCAAGAGAGTGTGACAAGACTACACTCCCAAATCTCATTGATTCTTCTTCAAGTCATTCACCATGGTTGAAGAAGAATCATAGTCTTCCAACAACACTAATGGCTTCAAGAGAAGATGTTAATATTCCAAGAGAGTGTGACAAGACTACACTCCCAAATGTTGGTGATGCACAAACATGTGTTGGCAATGACCCATCATCTACAACATGGTGGGAGAGTTTGTTGAACATGGATGAAGAAAGAAGCAATGAGAAAATTGATTCTTCCTCTTTATTACCAAAGGAGAATTTCACTTTGGAGTTTTCAAATGTGGAGGATTTTTTTAATAATGGTCCCACGGTCAGTGATTCCGATTGGGATTCCAATCTTTATGATTTCAATTTCTTTGGGGTCTTTAATTAG 693 0.3694 MYVCMYRWSLIAARLPGRTANDVKNYWHTNLRKKVIPRKEEKEEKEKSKESMIKSHEVIKPRPRTFSTHSLWLKKKHNFVSNGSATKLVISSEDGNVPRECDKTTLPNLIDSSSSHSPWLKKNHSLPTTLMASREDVNIPRECDKTTLPNVGDAQTCVGNDPSSTTWWESLLNMDEERSNEKIDSSSLLPKENFTLEFSNVEDFFNNGPTVSDSDWDSNLYDFNFFGVFN* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2685 230 SUPERFAMILY Homeodomain-like 6 37 IPR009057 -
Mtr5g2685 230 Pfam Myb-like DNA-binding domain 7 31 IPR001005 -
Mtr5g2685 230 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 7 83 - -
Mtr5g2685 230 Gene3D - 2 60 - -
Mtr5g2685 230 ProSiteProfiles Myb-like domain profile. 7 31 IPR001005 -
Mtr5g2685 230 CDD SANT 7 31 IPR001005 -
Mtr5g2685 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 35 IPR017930 -
Mtr5g2685 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2685 Mtr-Chr5 34999499 35000379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2685 7 67 MYB Transcription Factor Family AT1G66370 55.072 1.20e-13 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g2685 Myb_DNA-binding 5.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2685 - K16166 mtr:MTR_5g078860 447.973