Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2684 ATGGAAAAGACCAGAGGTTTGAGAAAAGGTGCATGGACATATGAGGAGGACAATCTACTCAAGGACTGTATTCAAAAATATGGTGAAGGGAAATGGCATTTAGTTCCTAAAAGAGCAGGTTTGAATAGATGCCGGAAAAGTTGTAGATTGAGGTGGGTGAATTATTTAAACCCTGCAATCAATAGAGAAAGTTTCTCCCATGATGAAATTGATATGATTCTAAGGCTACACAAACTCTTGGGGAACAGATGGTCATTGATTGCTGCGAGGCTTCCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACAAATTTGCGCAAGAAAGTGATTCCAAGAAAAGAAGAAAATGAAGAAAAAGAGAAATCTAAAGAAAGCATGATCAAATCTCATGAAGTTATCAAGCCTCGACCTCGAACTTTTTCAACTCATTCACTATGGTTGAAGAAGAAACGTAATTTTGTGAGTGATGGTAGTGCAACAAAACTAGTGATTTCAAGTGAAGATGGCAATGTTCCAAGAGAGTGTGATAAGACAACACTCCCAAATATAGGTGATGCACAACCATGTGTTGGTAATGTCCCACTTTCTACTATGTGGTGGGAGAGTTTGTTAAATGTGGATGAAGAAAGAAATAATGAGAAAAATGGCTCTTGCTCTTTATTACAAGAGGAGAATTTCACTTTGGAGTTTTCGAATGTGGAGGAATTTTTTACTAATGGCTCCACTGCCAGTGATTCCTTTTGGGATTTCAACCTTTGTGATATCAATAATTCCTCTGGGGTCTTTAATTAG 798 0.3784 MEKTRGLRKGAWTYEEDNLLKDCIQKYGEGKWHLVPKRAGLNRCRKSCRLRWVNYLNPAINRESFSHDEIDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTNLRKKVIPRKEENEEKEKSKESMIKSHEVIKPRPRTFSTHSLWLKKKRNFVSDGSATKLVISSEDGNVPRECDKTTLPNIGDAQPCVGNVPLSTMWWESLLNVDEERNNEKNGSCSLLQEENFTLEFSNVEEFFTNGSTASDSFWDFNLCDINNSSGVFN* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2684 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Mtr5g2684 265 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 5 160 - -
Mtr5g2684 265 Gene3D - 9 61 - -
Mtr5g2684 265 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Mtr5g2684 265 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Mtr5g2684 265 CDD SANT 64 107 IPR001005 -
Mtr5g2684 265 CDD SANT 11 56 IPR001005 -
Mtr5g2684 265 Gene3D - 63 136 - -
Mtr5g2684 265 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Mtr5g2684 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Mtr5g2684 265 SMART sant 8 58 IPR001005 -
Mtr5g2684 265 SMART sant 61 109 IPR001005 -
Mtr5g2684 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 160 - -
Mtr5g2684 265 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Mtr5g2684 265 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2684 Mtr-Chr5 34980926 34982340 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2684 2 209 MYB Transcription Factor Family AT1G66370 51.163 9.05e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g2684 Myb_DNA-binding 5.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2684 - K16166 mtr:MTR_5g078860 440.654