Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2675 ATGTCACCTATTTCTCTTTCAGCAAATGGAACACATATCTCAATGAAGAGAGAATCTCTTGCAGAAGACTATGCTGATAAAAAGAAGAAACCTCCACACAAATTCATGTTGAAAATCAAAAGCAGTCCTCTCGTCTTTCCTGCGATTTCCCTTTCAGCATACGGAAAGAAGATTCCGGTGAACAGACACTCTCTTGCAGAAGACAATGAAAAGAAGAAGCCAATGAAAGCAACCACTAATCGTCAACATCAACCTCTTTCAGCAAAAGGATCTCAAAACACAGTGAAGAGAAACTCTCTTTCACAAGACCTTGACGATGAATACGAGGAGAATAAGAAAGCAACCACTGGGAACAACAAACAGGTACAGATCAAGCCAGAAAGAAACAGAAACAAAATAAAGATAATTTTTCTTCTGAAGAGGAAAACAAAGACAGTTATAGAACAAGGTCAATCCTCAAAAATCTTCTGTGGTATATGCTTTGATTCTGTAACAGACTCTAACATGTTTTCAACTGGCTGCAATCATCCCTTTTGTACTAAATGCATATGCAAGTATGTGAAGAATCAAATAACAGAAAAAGTGGTGAAACTGAATTGTCCTGATCCAGAATGTTCCGTACGTTGA 627 0.3764 MSPISLSANGTHISMKRESLAEDYADKKKKPPHKFMLKIKSSPLVFPAISLSAYGKKIPVNRHSLAEDNEKKKPMKATTNRQHQPLSAKGSQNTVKRNSLSQDLDDEYEENKKATTGNNKQVQIKPERNRNKIKIIFLLKRKTKTVIEQGQSSKIFCGICFDSVTDSNMFSTGCNHPFCTKCICKYVKNQITEKVVKLNCPDPECSVR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2675 208 MobiDBLite consensus disorder prediction 62 126 - -
Mtr5g2675 208 MobiDBLite consensus disorder prediction 62 77 - -
Mtr5g2675 208 MobiDBLite consensus disorder prediction 79 99 - -
Mtr5g2675 208 Pfam Zinc finger, C3HC4 type (RING finger) 157 201 IPR018957 GO:0046872
Mtr5g2675 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 208 IPR013083 -
Mtr5g2675 208 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 96 206 - -
Mtr5g2675 208 ProSitePatterns Zinc finger RING-type signature. 174 183 IPR017907 -
Mtr5g2675 208 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 96 206 IPR031127 GO:0004842|GO:0016567
Mtr5g2675 208 MobiDBLite consensus disorder prediction 100 114 - -
Mtr5g2675 208 ProSiteProfiles Zinc finger RING-type profile. 157 201 IPR001841 -
Mtr5g2675 208 SUPERFAMILY RING/U-box 152 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2675 Mtr-Chr5 34834279 34834905 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2675 141 205 C3H Transcription Factor Family AT2G31510 38.889 2.43e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2675 K11968 - mtr:MTR_3g462570 138.272