Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2668 ATGGAGAAGCTTTTTCATTCCGTGTCTGAGATTGCCCTCGGTGAGGATGGATGGAAAATCAAGGTTCGTGTTTTGAGGCTTTGGGAGGTGCCCTCTTTTCTCAAGCCAGATCAGACAAACTCCCTTGAGATGGTTCTTATCGATGAGATGGGTACCAAGATCCATGCCAGTGTGAGGAAGCAACTTTTTTATGTTTTCCAAAGCAAGTTGAGCGAGGGAAAGGTCTATGAGATGTCCTGTTTCTCTGTTGCTCCAAGTGTTGGTTCTTATCGCACCACCCTACACCCATACAAGATTGTTTTCCAGATGACAACCAAGGTTCAAGCTTGTGAGGGTGCTTCTATTCCTTCGTTGGGAATTTCTCTCTGTAAGATTGCTGATGTCTGCCAGCACACTTCCGATCATGACTACTTAGTTGATGTTCTTGGTTTTATGACTGGAATCTCTGTTGAGAGAGAGTATGTAAGGGATGGTAAGGTCACCAAGATGGTTATTTTTGAGATTACTGATGCAAGTGGTAAGTGTGAGTGTGCCCTTTTTGGCCAATACGTTGACACTTTGAACAAACTAATGGGTAAGTCTGGTGGTGGGATGCCTATAATCTTGGTGCAGTTTGCCAAGGTCAAGATATTCAGAGACAAGGCATCCCTTCAGAATGTAATGAACACCACTCGGATTTTGATAAATCCTCCCATAGAGCAGGCTGACCAGATCAGGAAGAGTGTTACTTTTGGTAGTATGGATGTCTCATCTGTTCCCAGGATTGGGGCACGTTCAAAGGTATCCCTTGAGGAGGACTTTCTTCGTACCTTCCCCAAAAAGACTCTTGAACAATTGCACTCAACCTTTGAGGATGGAGTGTTTGTTGTTTATGCTACAATTGGTGGGCTGGTTGACCATGAAGATTGGTGGTATCCAGCCTGTAAATGCCATAGGAGTGTGTCTGCTGATTCTGGTGCGTTTTACTGTAAGGGGTGTGCCAAGCATGTTTTTCAGATGGTCCCAAGGTTCAGGGTTAAGGTTAATGTCAGCGACGCAACCAATGTTGGTGTTTTTGTTGTCTTCGACGGTGATATGCAGAATTTGCTCAACACACCCTGCAGTAGCCTTGTGTCTGTTGCAAAGGCTGAAAATGCTGGACATTATCCACCTGAGTTTGAAAAGTTGAAAGGTAAGAAGATGTTGTTCAAGGTTGAGAAGTGTACTTCTTCAAGCATTTTCTTTGACGGTTCCTTTAGGGTGAAGAGGGTTTGTGATGATCCTGCTATAATTCAGTCGTTCCATTTTGTTGGTGGTCAATGTACTCCGTCAAAGGAATTTACTGCTGATCTCCCAAAGGATGTCTACCATCTCGATGATGAAGATGTCGTCGTTCGTTCGTTTGTCCATGCCGCCTTTGGTGAAGGTTGTTCCAGGGCAGTTGCTTCTGCTGGTGAATCGGATATGCGTTCCACCTCTGTTGGTGTGAAGAGGAAACTAGAGGGTACCTTTGTTGAGATTGATTCTGATGATGAGCCATTGTCTTTGAGATATGGCAAGTTGAAGCAAGGTTGA 1554 0.4447 MEKLFHSVSEIALGEDGWKIKVRVLRLWEVPSFLKPDQTNSLEMVLIDEMGTKIHASVRKQLFYVFQSKLSEGKVYEMSCFSVAPSVGSYRTTLHPYKIVFQMTTKVQACEGASIPSLGISLCKIADVCQHTSDHDYLVDVLGFMTGISVEREYVRDGKVTKMVIFEITDASGKCECALFGQYVDTLNKLMGKSGGGMPIILVQFAKVKIFRDKASLQNVMNTTRILINPPIEQADQIRKSVTFGSMDVSSVPRIGARSKVSLEEDFLRTFPKKTLEQLHSTFEDGVFVVYATIGGLVDHEDWWYPACKCHRSVSADSGAFYCKGCAKHVFQMVPRFRVKVNVSDATNVGVFVVFDGDMQNLLNTPCSSLVSVAKAENAGHYPPEFEKLKGKKMLFKVEKCTSSSIFFDGSFRVKRVCDDPAIIQSFHFVGGQCTPSKEFTADLPKDVYHLDDEDVVVRSFVHAAFGEGCSRAVASAGESDMRSTSVGVKRKLEGTFVEIDSDDEPLSLRYGKLKQG* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2668 517 CDD RPA1_DBD_A_like 19 107 - -
Mtr5g2668 517 CDD RPA1_DBD_C 277 398 IPR013955 -
Mtr5g2668 517 Gene3D - 3 110 IPR012340 -
Mtr5g2668 517 Gene3D - 114 247 IPR012340 -
Mtr5g2668 517 Gene3D - 259 417 IPR012340 -
Mtr5g2668 517 SUPERFAMILY Nucleic acid-binding proteins 5 112 IPR012340 -
Mtr5g2668 517 Pfam Replication factor-A C terminal domain 289 399 IPR013955 -
Mtr5g2668 517 CDD RPA1_DBD_B_like 140 242 - -
Mtr5g2668 517 SUPERFAMILY Nucleic acid-binding proteins 120 248 IPR012340 -
Mtr5g2668 517 PANTHER REPLICATION FACTOR A 1, RFA1 22 370 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr5g2668 517 Pfam Domain of unknown function DUF223 43 114 IPR003871 -
Mtr5g2668 517 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 370 - -
Mtr5g2668 517 SUPERFAMILY Nucleic acid-binding proteins 275 398 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2668 Mtr-Chr5 34737906 34740668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2668 18 373 Core DNA Replication Machinery Family AT2G06510 21.636 4.44e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2668 - - mtr:MTR_1g075850 780.785