Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2644 ATGGAAGCTTCACATGAAAGAGAGAGAATCGATCAATTCTTCAATTTTTTCCATCAACAACAACAACCCACCATGTCATTCTCCATCATCGACGCTTCAAAGAAGCGAAAACGATGGACGAAGATTTTCCCGCTACAATCGTTCGCTGACCCTGGTTGTCCAATTTCACCTTCAGGTCCGTTCCGTGAAAACGTTCGACTCTTTCTTCAAGAAGCTGGTGAGCTTGAAGATTATACGGTTATGGGAAATCCTCTTTGGTGCACTTTTCTGATTCATGAAAAGAAGAATCTAATGGTTCCTTTCTATGCTCTTGAAGAAGAAGTTTATAACTCTTCTCATCCTTTCTGTGATCATTGCCGTTGTGTAGGTTGGAGTGGACATTTTGTATCAAAGAGAAGGTACCATTTTATAATCCCAATGGATGATGGGTGGCATAAACCCTTAAATGAAGAAGCTCTTGATGATCAGAGTCATCTATTACATGGTGTGATTCATTGCAATGGTTATGGCCATTTGGTATGTCTTAATGGCATTGAAGGTGGTTCCAAATTTCTTAGTGGGAGAGAAATCATGGATCTATGGGACAGAATTTGCACCAATCTTAGAGCAAGGTACATTGCAGTTGAAGATGCTTCAAGAAAAAGGTCAATGGATCTTCGCTTACTTCATGGAGTTGCTTATGGTCACTCTTGGTTTGGTAGGTGGGGTTATGGTTTTTGCCGTGGAAGCTTTGGTGTGACACAACAAAACTATGATGAAGCTATTGAAATTCTTGGTTCATTAGTTCTTGATGATATTGTAAGAGATTTGAGTAAGACAAAGTACCACAAAGATGTCAAGCAAATGATTCGTTTCTATAGAGATATGAGTGAAACTCATATCATCACAATAAGAGAGCTTCTAAGATTCATGCTCACTATCAAGTCCCGTAGACCAGTGTCAAAAATGACAGTCACTTTTTCTTCTCCTAATGCTGTTTCTGATACTGATTCACCTTCTTGTTCTACTTCAGCATTTATGTCCAGAAATGCATCCAAACCTGTACTTTCAAGTAGCAGATCAAATTTCACAATGAAGGAAAAATCAGCTAGGTATAAGAAATTCAGCACTGCAGTAGCTAACATGGATAGTAGGTGGCCAACAAGGAGATTAGAGTTTGCAGCTCAAGTGATTGTGGAAGCATTAAAAGAGGATAAAGCTATGAAACCAGGCTCTAGTGGAATGACAAGACAAGATGTGAGGGATGCAGCTAGGCTTCACATTGGTGATACTGGTTTACTTGATTATGTGCTGAAATCACTTAACAATGTGATTGTTGGAAACTATGTAGTTCGCCGCACAGTTAACTCTTCCTCAAGGATCCTTGAATATACAATTGATGAGCTCAGAAAAGGGCACCAAGCACCTGAAATGGAACATGGTGTATTGACAGTTGCAGATAAACCTCAAGTCGAGTCATCAACGTTATCATCATCATCATCTTCGGTGCCTGGTAATGATGTTTACAGTGATGTGGTTTATCTTTACAAGAATGTGTTGTTGGGTTATCCAGATTCAGAGGCAGTGGAATTAGCAGTTCAAACAATTCTTGACTGCAGACACTTTGTGAAAGAGTGGAAATTGAGAGATGAAATGGAACAAGTTTTGACATTTATTTGCCATTTGAAACCGAATTTCGTTGAGAATAAGTCTGATTTAAAAGGGCCATCTTGTGGTGAGATTGTAACTGTTCCATTGCATGCAACAGTTAGAGACTTAAAGCAAACTGCTGAGGCTGCATTAAGGGACACATATTGCATAGCTGAAAGACTCATAGTGACAGATATCAAAGAATTGATGGATGTAGAAGATGAAGAAGTGATTTTTGGACAGATTGAATCTGGTGTGAAGCTTTCTGTAAGGGGAATTGGCATTGATTTGTGTACTCCATTGAAATATCAAGGAGGAAGTGATAATTGGAAAGTGAGGTGTGAGTGTGGAGCACAAGATGATGATGGTGAGAGAATGGTGGCTTGTGATATTTGTGAAGTGTGGCAGCATACAAGATGTTGTGGAATAGATGATTCTGAGACAGTTCCACCTTTGTTTGTTTGTTCTGGATGCTGTGATTCACTTATGCCACCAAGGATTGAATCTAGCAGCTTTGGTATGGTCGATTGTGCTGATTCTTTTCTTGTTTCACCTGAGCCTACTCATTTGTTAGAGTATTATGGATATTGA 2220 0.3932 MEASHERERIDQFFNFFHQQQQPTMSFSIIDASKKRKRWTKIFPLQSFADPGCPISPSGPFRENVRLFLQEAGELEDYTVMGNPLWCTFLIHEKKNLMVPFYALEEEVYNSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDDGWHKPLNEEALDDQSHLLHGVIHCNGYGHLVCLNGIEGGSKFLSGREIMDLWDRICTNLRARYIAVEDASRKRSMDLRLLHGVAYGHSWFGRWGYGFCRGSFGVTQQNYDEAIEILGSLVLDDIVRDLSKTKYHKDVKQMIRFYRDMSETHIITIRELLRFMLTIKSRRPVSKMTVTFSSPNAVSDTDSPSCSTSAFMSRNASKPVLSSSRSNFTMKEKSARYKKFSTAVANMDSRWPTRRLEFAAQVIVEALKEDKAMKPGSSGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVGNYVVRRTVNSSSRILEYTIDELRKGHQAPEMEHGVLTVADKPQVESSTLSSSSSSVPGNDVYSDVVYLYKNVLLGYPDSEAVELAVQTILDCRHFVKEWKLRDEMEQVLTFICHLKPNFVENKSDLKGPSCGEIVTVPLHATVRDLKQTAEAALRDTYCIAERLIVTDIKELMDVEDEEVIFGQIESGVKLSVRGIGIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLMPPRIESSSFGMVDCADSFLVSPEPTHLLEYYGY* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2644 739 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 34 709 - -
Mtr5g2644 739 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 644 705 IPR013083 -
Mtr5g2644 739 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 34 709 - -
Mtr5g2644 739 SMART PHD_3 656 702 IPR001965 -
Mtr5g2644 739 SUPERFAMILY FYVE/PHD zinc finger 649 707 IPR011011 -
Mtr5g2644 739 ProSitePatterns Zinc finger PHD-type signature. 657 701 IPR019786 -
Mtr5g2644 739 CDD PHD_MMD1_like 657 701 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2644 Mtr-Chr5 34484717 34487689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2644 18 707 PHD Transcription Factor Family AT5G22260 33.198 3.03e-121 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2644 - - mtr:MTR_5g077750 1458.35