Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2640 ATGGGCGAAGAAAAGCAACAGAGTATTCCTGCTTTGCCATGGATGCGAGACCCTGTCGACGTCACTCTCACTCAGCAACTTCCTCTTCATTCCGTCCCTTCTCTCCACCCTAAGTTGAAGTCAGCATTGGAGGACATGGGAATCTCAAACCTATTCCCAGTGCAAGTTGCAGTTTGGCACGAAACAGTTGGACCCGGCAATTTTGAGCGTGACATTTGTGTTAACTCGCCCACCGGAAGCGGCAAAACCCTCGCATACGCTCTCCCCTTGGTGCAGATGCTATCAGGCCGTGTCACCAAATGTCTCCGCGCCTTGGTTGTCGTTCCCACTCGCGACCTTGCTTTACAGGTCAAACAAGTCTTTGACGCCGTTGCATCTCCATTAGGCCTGCGTGTCGGATTAGCTGTTGGACAATCATCCTTAGCTGATGAGATTTCTGAGCTCGTTGAAATGCCGGCACGTGATATAGGCACATGCTATGATCCACATTGCATTTCACTTCCTCGCTTTCAGAGTAAAGTTGACATATTGGTAGCAACCCCTGGTAGGCTTATGGATCACATTAATACTACCATAGGCTTCACGCTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGATTGCTTCGTGAGGCATACCAATCATGGCTGCCTACTGTGCTTGAACTGATCCAATCTAATGATGATGGTTTTTCCCTACCGTCTGCTTCTTTTTTCCCCTGTTCTGCTAGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGGTTCAAGGACAAGCCTTATCCCAGGCTGGCAAAGATGGTTCTATCTGCGACATTAACTCAGGATCCAGGCAGACTTATTCAGCTTAATTTGCACCACCCTTTATTATTGAAAGCTGGACAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTATAAACTGATTTGTGAAAAAAAGGTCAAGCCTTTATATTTAATTGCCCTTTTGAAATCCCTGGGAGAAGAAAAGTGCCTGGTTTTTACAAAATCTGTGGATTCAACACATCGTCTCTGCCAATTGCTAAATTGTTTTGAAGATCTGCGAATTGATATCAAGGAGTATTCTAGTTTACAACATCAACGTGTAAGAAGCAAGACATTGAACGAATTCCGTAAAGGGGTGTTTCAAGTGCTTCTATCTTCTGATGCATTGACTCGTGGGATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACGTGCCCAAATTCATAAAAACTCATGTTCATCGGGCGGGCAGGACTGCAAGAGCTGGCCAGACTGGGCGTTGCTTCACATTGATGTCAGAAGATGAGGTTCGACGATTTAAGAAGTTAATTGGAAAGGCTGAGGGTGGTTCTTGTCTGGACCATATTGTTCCGTCCAGTCAAATTGAAGCACTCAACACTACCTACGAATCAGCACTGACAAAATACAAGGAGATAATTTCGAAGACACGAAAGAAACCCAAGAATTAG 1494 0.4471 MGEEKQQSIPALPWMRDPVDVTLTQQLPLHSVPSLHPKLKSALEDMGISNLFPVQVAVWHETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSGRVTKCLRALVVVPTRDLALQVKQVFDAVASPLGLRVGLAVGQSSLADEISELVEMPARDIGTCYDPHCISLPRFQSKVDILVATPGRLMDHINTTIGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELIQSNDDGFSLPSASFFPCSASALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLIQLNLHHPLLLKAGQMRYRLPENLESYKLICEKKVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFEDLRIDIKEYSSLQHQRVRSKTLNEFRKGVFQVLLSSDALTRGMDVEGVRNVINYDVPKFIKTHVHRAGRTARAGQTGRCFTLMSEDEVRRFKKLIGKAEGGSCLDHIVPSSQIEALNTTYESALTKYKEIISKTRKKPKN* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2640 497 Gene3D - 306 497 IPR027417 -
Mtr5g2640 497 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 27 476 - -
Mtr5g2640 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 450 IPR027417 -
Mtr5g2640 497 CDD SF2_C_DEAD 308 439 - -
Mtr5g2640 497 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Mtr5g2640 497 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Mtr5g2640 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Mtr5g2640 497 SMART helicmild6 350 431 IPR001650 -
Mtr5g2640 497 PANTHER RNA HELICASE 27 476 - -
Mtr5g2640 497 CDD DEADc_DDX51 39 295 - -
Mtr5g2640 497 Gene3D - 19 298 IPR027417 -
Mtr5g2640 497 SMART ultradead3 47 311 IPR014001 -
Mtr5g2640 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 473 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2640 Mtr-Chr5 34452703 34459337 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2640 71 446 Eukaryotic Initiation Factors Gene Family AT3G13920 23.834 1.21e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2640 K14807 - vvi:100258315 674.085