Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2636 ATGGTTTTATCATGGACAAAAGGTAGTAGGGTTTTCCGTCGTGCAAGAAAAGGAAAAGAGTTACTATCAAATTCATGCAACGATTTACAAGTGGAGATAGCAATTCCAACTCATTTTCGTTGTCCAGTAACACTAGACTTAATGAAAGACCCCGTTACACTTTCAACCGGCATAACCTACGACAGAGACAGCATCGAAAAATGGTTTGAATCAGGTAACAACTCATGTCCGGTTACAAAAACAGAGTTAACATCCTTTGACATCGTACCAAATCACTCTCTACGTAGAATGATTCAAGATTGGTGTGTTCAACACCGTTCCTATGGCGTCGAAAGAATCCCAACTCCACGTATTCCAGTAACTCGTTATGAAGTTACTGATACGTGTAGTAGGATTCTTTCGGCAGCGCAACAAGGAGATGAGAGCAAGTGTTTTGAATTGGTGAGAAAGATAAAGGGTTGGGGAAAAGAGAGTGAGAGGAACAAGAAGGTTATAGTTTCAAATGGTGTTTCTCTTGTTCTTGCTAAGGTTTTTGATTCTTTCTCACGTGGTTTGATTGAGAAGAACGTTGTTCTTTTGGAAGAGATTTTGGAAGTGCTGACATGGATGCGTCCTCTTTCTGAAGAGAGTAGATTTGTCTTTTTGGGATCTTCAAATTCTTTGAGTTGTTTGGTTTGGTTCTTAAATGATCAACAAAAAATTTCAACCAGGCAAAATGCTTCTTTGTTGCTTAAGGAAATGAATGTTGAGTCATTGGCAAAAATTGAAGGGATTGTTGAATCTTTGGTCAACATGGTTAAGGTTAATGTTGAGATTGGGAGTGCTTCTACAAAAGCATGTTTATCAACAATTTTTCATTTGGTTTACTCATCAAAGAGTAAAAAAGTGATTTTGGAGAGGTTTGTTGAATTGGGTTTGGTTTCAATTTTATTGGAGATTCTTGTTGATGCTGAAAAAGGAGTTTGTGAGAAAGCTTTAGGTGTGTTGAATTGTCTTTGTGATAGTAAAAATGGGGTGCAAATAGCAAAGTCAAATGCTTTGACTTTGCCTCTTGTTATTAAGAAGCTTTTGAGGGTTTCTGAATTGAGTTCTAGTTTTGTTGTTTCTATTGTTTACAAGATTTGTGACAAGGCTGAGGAAGGTATTTTGATTGAGGCAATTCAACTTGGGATGTTTCAGAAACTACTTGTTTTGTTGCAAGTAGGTTGTGCTGAGAGTACCAAGGAGAAAGCTACTGAATTGTTGAAATTGTTGAACGGTTATAAAAGCAAAGCAGAGTGTGTTGATTCATCATCATTGGATTTCACACACCTTAAGAAGCCATTCTAA 1329 0.3717 MVLSWTKGSRVFRRARKGKELLSNSCNDLQVEIAIPTHFRCPVTLDLMKDPVTLSTGITYDRDSIEKWFESGNNSCPVTKTELTSFDIVPNHSLRRMIQDWCVQHRSYGVERIPTPRIPVTRYEVTDTCSRILSAAQQGDESKCFELVRKIKGWGKESERNKKVIVSNGVSLVLAKVFDSFSRGLIEKNVVLLEEILEVLTWMRPLSEESRFVFLGSSNSLSCLVWFLNDQQKISTRQNASLLLKEMNVESLAKIEGIVESLVNMVKVNVEIGSASTKACLSTIFHLVYSSKSKKVILERFVELGLVSILLEILVDAEKGVCEKALGVLNCLCDSKNGVQIAKSNALTLPLVIKKLLRVSELSSSFVVSIVYKICDKAEEGILIEAIQLGMFQKLLVLLQVGCAESTKEKATELLKLLNGYKSKAECVDSSSLDFTHLKKPF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2636 442 SUPERFAMILY ARM repeat 128 420 IPR016024 -
Mtr5g2636 442 SUPERFAMILY RING/U-box 32 111 - -
Mtr5g2636 442 PANTHER WDSAM1 PROTEIN 9 442 IPR045185 GO:0061630
Mtr5g2636 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 112 IPR013083 -
Mtr5g2636 442 Gene3D - 119 431 IPR011989 -
Mtr5g2636 442 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 442 - -
Mtr5g2636 442 CDD RING-Ubox_PUB 39 80 IPR045210 -
Mtr5g2636 442 Pfam U-box domain 35 106 IPR003613 GO:0004842|GO:0016567
Mtr5g2636 442 ProSiteProfiles U-box domain profile. 34 108 IPR003613 GO:0004842|GO:0016567
Mtr5g2636 442 SMART Ubox_2 38 101 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2636 Mtr-Chr5 34390517 34392200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2636 10 442 U-box Gene Family AT5G37490 44.091 1.18e-113 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2636 - - gmx:100795913 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1979 3 32859852 32861523 Mtr5g2636 5 34390517 34392200 PCT