Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2633 ATGAAACAAAACATTGATCTTGAAGTAGAAGCTTGTGCAGAATATGAATCTGAAGTTACAAGCCAAGTTGATTCTAATGTATCAACTCAAGAAACCTTTTACAACATCACAAATCCTAATTCATATGATATATCTCTTGACCTAAGTCTAAATTTCAAGAACAGTGAGATACCAACAACAAGAGATTCAAATTCAATAGGATTCTCACTTTCAAGCACTTCTGAGAGCAGTAATGAACCTGCAACAGCAACAATTCCAAGAGTTTTCTCATGCAATTACTGTCAGAGAAAGTTTTTCAGTTCTCAAGCTCTTGGTGGACACCAAAATGCACATAAAAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATGGGAATGTTTTCTGATAGGTATAATGCTAGTTTAGCATCTTTACCTTTGCATGGTTCTTTTAGGTCATTAGGGATAAAAGCACACTCTTCAATGCACTATGGTTTCTCACCAACAACAATTAGGCCTCATCATCATGAGGTGAGAAATAATATGAGATTCGAGCAACAAGGTTGCGTCGGATTTCCAATATTCTTGGAAGACGAGGAGTCAAAGTTGATGTGGCCAGGTAGTTTTCGACAAGAATCCGGGGCGGGTGGTGCTCAACAGAATTTCATACTCACTGAGGTGAATCCTTGTGTAGACATAGAAAAATCTACCCCAGATTTGACATTGAAACTTTGA 714 0.3739 MKQNIDLEVEACAEYESEVTSQVDSNVSTQETFYNITNPNSYDISLDLSLNFKNSEIPTTRDSNSIGFSLSSTSESSNEPATATIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGMFSDRYNASLASLPLHGSFRSLGIKAHSSMHYGFSPTTIRPHHHEVRNNMRFEQQGCVGFPIFLEDEESKLMWPGSFRQESGAGGAQQNFILTEVNPCVDIEKSTPDLTLKL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2633 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Mtr5g2633 237 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Mtr5g2633 237 Gene3D Classic Zinc Finger 68 135 - -
Mtr5g2633 237 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 237 - -
Mtr5g2633 237 PANTHER ZINC FINGER PROTEIN JAGGED 1 237 IPR045320 GO:0003700
Mtr5g2633 237 SUPERFAMILY beta-beta-alpha zinc fingers 87 116 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2633 Mtr-Chr5 34333842 34336471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2633 71 237 C2H2 Transcription Factor Family AT1G66140 48.241 5.95e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr5g2633 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2633 - - gmx:100788768 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1978 3 32841354 32844042 Mtr5g2633 5 34333842 34336471 PCT