Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2613 ATGTCTTCATCGGAGCCTAAGTACGACACCCCACCGGCCCCAACATACAAGACCCCACCGGCTCTAGTAGCCTTCACCCTCACCGTCCTCATCTTATGCTTTGTGGCTTTCAGCGTTGTGTATGTTTGCAAGTATTGTTTTGCTGGCTTTTTCCACACTTGGGCCTTGCAACGCACGACCTCAGGTTCCCTCGTTCGTCTCTCACCTGATAGGTCACCCTCTAGAGGACTCGATAATACCCTTCTAGAAAAATTCCCCACTTTCCTCTACTCCTCCGTGAAAGACCTTCGTAAGGAAAAGAGTTATAGCTTAGAATGTGCCATTTGCTTGCTAGAGTTTGATGATGATAGCATGCTTCGTCTCCTAACCATTTGTTGTCATGTTTTCCACCAAGAATGTATTGACCTATGGCTTGAATCTCATAAGACATGCCCCGTTTGTCGAACAGACCTTGATTCACCTCCCAACCAAATGTCCAAACACGGGGAAGGCAACCACAACAACAACAATAACAACCTTAATGTGCAAGAGGGTATGACATCGTTACCATGCGATGATATACACATTGATGTTAGAGGAGAGGAAAGTGACAATGTTGGTGAAATCACTAGAGCTCAAGTACATGAAGGTGATCAACATGATCATCATGTGGGTATGAGTATGCAACAACAAGAAGATCATAGATTTTCAAGGTCACATTCAACGGGACATTCTATAGTAACTATTAGAGGTGAAGAAAAAGATCATGAGAAATATACATTGAGATTGCCTGAACATGTTATAAGGGGAGGGCACAATTACACGAGGAGTTGCACAAATTACAACGAGATGAAATTGACAATTCCTACACCTTGTAGTAATTGTGGTTTTGTTAAACCGGTTATTGGGTCCTCTTCACTTGCTTGTGCTCAAGAGGCTTGA 921 0.4332 MSSSEPKYDTPPAPTYKTPPALVAFTLTVLILCFVAFSVVYVCKYCFAGFFHTWALQRTTSGSLVRLSPDRSPSRGLDNTLLEKFPTFLYSSVKDLRKEKSYSLECAICLLEFDDDSMLRLLTICCHVFHQECIDLWLESHKTCPVCRTDLDSPPNQMSKHGEGNHNNNNNNLNVQEGMTSLPCDDIHIDVRGEESDNVGEITRAQVHEGDQHDHHVGMSMQQQEDHRFSRSHSTGHSIVTIRGEEKDHEKYTLRLPEHVIRGGHNYTRSCTNYNEMKLTIPTPCSNCGFVKPVIGSSSLACAQEA* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2613 306 CDD RING-H2_EL5_like 105 148 - -
Mtr5g2613 306 PANTHER RING-H2 FINGER PROTEIN ATL29 3 278 - -
Mtr5g2613 306 SMART ring_2 106 147 IPR001841 -
Mtr5g2613 306 SUPERFAMILY RING/U-box 82 156 - -
Mtr5g2613 306 Pfam Ring finger domain 105 148 IPR001841 -
Mtr5g2613 306 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Mtr5g2613 306 PANTHER RING FINGER DOMAIN-CONTAINING 3 278 - -
Mtr5g2613 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2613 Mtr-Chr5 34146413 34147392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2613 20 262 Rapid Response to Elicitors AT2G35000 33.203 5.98e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2613 - - gmx:100815505 332.798