Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2612 ATGGAGATTTTGGGTCAAAAAGAAGGAATGCATTCTGTTATACATGTTCAAAAACTACTTGATCAATTTTCATGTGGAAATGACCATGCCTTGAAGGCAAGGAAGCCATATACTATCACAAAACAGAGAGAAAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAATTATACGGCCGAGCCTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATCAATCGAGACACTGATGGGAATGATACAACAATGGTGGAGACAATTGAAATTCCACCTCCAAGACCAAAACGGAAGCCGATTCATCCTTACCCACGTAAACTAGTTGAAATCCCAAAGAATGAAATCTCCAACTTGGAACAGCCACTGAGGTCTAATTCGCTTGTGTCGTTAGATTTTGGTCAAGAAAACAACTCTCCAAAGTCAGTATTATCTGCAGTTGCTTCAGAAACCCTTGGTTTCTCTGATTCAGATACCCCTGCCGGAAGTTTGTCCCCGGTCTCATCCATTAGTGCTGTTCATACCAGTAGATTTCCACTTCTTGAGTCCAAATCATCATCATCTGAGGAAGATCTGTCTCAACAAATAGATGAACTGAATGGCGGTTCAACTCATGATGTACAACCTTTAATGAAACTGGAGCTTTTCCCTAAAGAATGTGTCGCAACCAACGAAGTAGCAGCAGAAGAATCACCTTGTCGAACTCTCAAACTTTTTGGAACAACTCTGTTAGTAAAAGATACTTGCAAGTCTTCTTTGACATCAACGGACGCATCCGAACCTATTCCTGCCACGCAGCAACTTCAGCGTGGTTGTTCAGATATTAGTCTTGCAACTGTTGTGCCTTGGTGGACTATTTCAGACAATTCGGCATTCAAGCCACTGCACACGGAACCAGAGGGAAAACATCTACATTCAAATCATGGAGAATGCGAAGATAAAGAAATTCAAAAGGAAGGATCTTCGTGTGTTGGTTCTAATAGTACTAGTTCAATCAGTGATGAAGAAAGCAATGAAAGATTAGACGATCAAGCCAAAAGTGATAATGTGAATTACTTTGTTGGCCACACTACACTAAATGAAACAGTTAGACTTAGAACATTTGGAAAAGGGTTTGTACCATATAAAAGGTGCATGGCAGAAAGAGAAAGACAATGTTCGACAGTAACAGATGAGAGGAGGGAACATCAACGTATGAGACTTTCCTTATAG 1263 0.4038 MEILGQKEGMHSVIHVQKLLDQFSCGNDHALKARKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTDGNDTTMVETIEIPPPRPKRKPIHPYPRKLVEIPKNEISNLEQPLRSNSLVSLDFGQENNSPKSVLSAVASETLGFSDSDTPAGSLSPVSSISAVHTSRFPLLESKSSSSEEDLSQQIDELNGGSTHDVQPLMKLELFPKECVATNEVAAEESPCRTLKLFGTTLLVKDTCKSSLTSTDASEPIPATQQLQRGCSDISLATVVPWWTISDNSAFKPLHTEPEGKHLHSNHGECEDKEIQKEGSSCVGSNSTSSISDEESNERLDDQAKSDNVNYFVGHTTLNETVRLRTFGKGFVPYKRCMAERERQCSTVTDERREHQRMRLSL* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2612 420 ProSiteProfiles SANT domain profile. 41 92 IPR017884 -
Mtr5g2612 420 CDD SANT 45 88 IPR001005 -
Mtr5g2612 420 PANTHER PROTEIN REVEILLE 7-RELATED 20 407 - -
Mtr5g2612 420 SMART sant 42 90 IPR001005 -
Mtr5g2612 420 Gene3D - 45 92 - -
Mtr5g2612 420 Pfam Myb-like DNA-binding domain 43 86 IPR001005 -
Mtr5g2612 420 ProSiteProfiles Myb-like domain profile. 38 88 IPR001005 -
Mtr5g2612 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 90 IPR006447 GO:0003677
Mtr5g2612 420 MobiDBLite consensus disorder prediction 314 336 - -
Mtr5g2612 420 PANTHER SWI/SNF COMPLEX-RELATED 20 407 - -
Mtr5g2612 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 92 IPR017930 -
Mtr5g2612 420 MobiDBLite consensus disorder prediction 337 351 - -
Mtr5g2612 420 MobiDBLite consensus disorder prediction 314 361 - -
Mtr5g2612 420 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2612 Mtr-Chr5 34130330 34133618 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g2612 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2612 - - gmx:778060 483.796