Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2603 ATGGAATTGCAGCCTCTGATAATTTCAAACTGGTTGCTTAATTGCTCCAAATGTTTTCATCGCTTAACTATTCCCGTCTCCCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTCTCCTAAACTTAGGAACAAGTGTTGGTGCTCATTGCCCATTAGCTCAAAACATTGTAAAGCCATTGAGAATCTAATGCTATCTATTGAAATATCATGTCCGAATGCCGAACATGGTTGTAGAGTAAAAATAAGTTACATCGGAAATCGGAAGCATGAAGACGAATGCATATACGTACTATGTTACTGCCCCATTTTAGGTTGTGGCTTTGCTGCAACATCAGAAGTGTTGTCCAACCATTTCAGCCGAAAACACCGGAATTCTCAAATCAAATTTAATTATGGTCACTCCTTCATTGTCTCCTTAAAGTCCAATGATCAAGCCATTGTTCTTCAGGAGGAAAATGATGGCAAACTATTTATTCTCAATAATAGTACTATACTTTTAGGAAATGCAGTCTATATTTGCTGCATTGGTCCTAACTCCTCTGAGTCCGAGTATAGTTATGATATATTGGCTAGGTCTCAGACATGCAAACTGAAATTACAGTCTTTTGTGAAAAATGTCCAGCAGTTTACTTTAGCAACTCTTCCATCAGAGCTCCTTGTGATTCCAGTTGGCTCTTCTGAACCACTCAAGCTAGAAATTTGCATATCTTACATAACCCCCATGATGGAAATATCAATAAATATGCCTGGAAAGATTAAGATTATTCCCCTGAGGGTTAAGATTTCAGACACGATAGTTAATGTGAAGAAGAAGTTTTTTACAAGGAAGGGATCCCAGTACACCAACAACGTTTGA 861 0.381 MELQPLIISNWLLNCSKCFHRLTIPVSQCDNGHIVCSTCSPKLRNKCWCSLPISSKHCKAIENLMLSIEISCPNAEHGCRVKISYIGNRKHEDECIYVLCYCPILGCGFAATSEVLSNHFSRKHRNSQIKFNYGHSFIVSLKSNDQAIVLQEENDGKLFILNNSTILLGNAVYICCIGPNSSESEYSYDILARSQTCKLKLQSFVKNVQQFTLATLPSELLVIPVGSSEPLKLEICISYITPMMEISINMPGKIKIIPLRVKISDTIVNVKKKFFTRKGSQYTNNV* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2603 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 243 - -
Mtr5g2603 286 Pfam Seven in absentia protein family 59 210 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr5g2603 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 243 IPR044286 -
Mtr5g2603 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 120 IPR013083 -
Mtr5g2603 286 ProSiteProfiles Zinc finger SIAH-type profile. 67 125 IPR013010 GO:0008270
Mtr5g2603 286 SUPERFAMILY TRAF domain-like 67 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2603 Mtr-Chr5 34067458 34070264 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2603 12 224 C3H Transcription Factor Family AT2G41980 25.000 9.11e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2603 K04506 - gmx:100797881 201.83