Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2601 ATGGAAGCGGGTACCGAAGACTGTGAAGAGACCGTTGATTCCTCAGAAGATGTTAATGAGAAAAATTCTGTTTCTGTGATGATTTCCGACCCAAATTCATTTGATTGCTGCATTTGTTTTCAACCCTTGAGTATCCCCGTGTTCCAGTGTGTTAATGGTCATATTGTTTGCTCAACCTGCTGTGATAAACATCGGAACAAGTGTCCCAAATGCTCAAAACGTATTCGCTTAAAACGTTGTAAAGCCATTGAGAATCTTTTGCAATCTTTCGAAATGTCATGCCCGAATGAAAAACATGGCTGCAAGGAGACAATGGGCTACAATGAGAAGAAGAAGCATGAAGAAGAATGTATGTATGTGCCATGTTACTGTCCCCTTTCAGGTTGTGACTTTGTTGCCTCATCAGAAGTGTTGTCCAATCATTTCAGCCATAAACACAAGGATTTTCAAAGCACATTTTCTTATGGTCACTCCTTCATTGTCTCCTTAAAGTTTAATGACGAAGCCATTGTTCTTCAAGAGGAATGTGTCGGCAAACTGTTTATCCTCAATAATAGTATTGTGAGTCTGGGAAATGCGGTCAGTATTAGCTGCATTGGTCCTAACTATTCTGAGCCGTGGTATCAGTATGATATATTGGCCAGGTCTCAAATATGCAGTTTGAAGTTACAGTCTTTTCCGAAGAATGTCCAACGCGTTAGTTTAGCAGATCTTTCATCAACGTTCCTCGTGATTCCATTTGGTCATTTTGGTTCTTCTGAACTTCTCGAGCTAGAAATTTGCATAACCCCCAAGATGCAAATCTTCATAAAGACCCTGACTGGAAAGACGATCCCCCTGAAGGTGGAGAGTTCATACACAATAGCAAACTTGAAGGCGAAGATTCGAGAGAAGGAAAGAATCCCAGTGGATCAGCAATGTCTGATCTTTGCCAGTAAGGAACTAGCTGACTGTCAGACCCTTGCCAATTACAACATCCAAGAGAAGTCAACCCTCAACCTCATCCTCCGAAGAAGAAAGGGTATGCAAATATTTGTAAAGGGTTTAGATGGAAAGACAAAGACCCTTAAAGTTAAGAGTTCATACAGGATTCCCAAAGTGAAAGAGATGATTTTTGAGAATGATGGTATCCCAGTGCAAGACCAACGTCTGATCTTTGCTCGTATGCAACTCGATGGCAACCGGACCCTTGCCGATTACAATGTCACAAAGGAGTCAACCCTCCACCTCGTCCTCCGCCTCCTTGGAGACATGCAAATATTCATAAAGATCATATATGAAAACAAGAGGTTCCCCCTGATGGTTAAGAGTTCAGACACGATACTCAATGTGAAGAAAAAGGTTCAGGACAAGGAAGGGATCCCTGTCCACCAACAACGTCTGTTCTTTTCCAAGAAGCAACTAGAGAACCGCCAGACCCTTGCCAGTTACAACATCCAAGAGAAGTCAACTACGGAAATTTCCCTCATTTTCCGTGGCATAGGTCCCCCTGATGGTTACAAGTTCAGACACGATACTAATGTGAAGAAGAAGAATTATGAAATGGAAGCGATCCCAGTGCACCAACAGCGTCTATTCTTTGACGGTAAGCTAATAGAGGAACGCCAAATCCTTGCCAATTACAGCATCCAAGAGAAGTCAACTATTGAAACGACTTTGCGTTCTCCTCAGTTTCCGTGGCTTGGCAGACTAGATGACCACCACACCTCATTGTCTGCTACTAGTTCAGACACGATACTGGATGTGAAAAAGAAAATTCATGACAAGGAAGGGATCCCAGTGCACCAGCAGCGTCTATTCTTTGACGGTAAGCCAATAAAGGACCGCCAGACTCTTACCAATTACAACATCCCGAGAACTCAACCATTGACACTCGTTCGGCTTTGTTTGGGAATGCAAATCTACGTAAAAGACCTGACTGGAAAGATGATCCCCTTGAGGGTTGAGAGTTCAGACACAATAGAAAATGTGAAGAAAAAGATTCTTGACAAGGAAGGGATCCCAATGCACGAGCAACGTCTGATCATCGACGACGGTAAGCAGTTAGAGGACAACCTTACCCTTGCCAATTACAACATCCAAGAGAATTCAACCATCCACCTCCTCATCCGCCTCCATGGGAGCTAG 2127 0.4321 MEAGTEDCEETVDSSEDVNEKNSVSVMISDPNSFDCCICFQPLSIPVFQCVNGHIVCSTCCDKHRNKCPKCSKRIRLKRCKAIENLLQSFEMSCPNEKHGCKETMGYNEKKKHEEECMYVPCYCPLSGCDFVASSEVLSNHFSHKHKDFQSTFSYGHSFIVSLKFNDEAIVLQEECVGKLFILNNSIVSLGNAVSISCIGPNYSEPWYQYDILARSQICSLKLQSFPKNVQRVSLADLSSTFLVIPFGHFGSSELLELEICITPKMQIFIKTLTGKTIPLKVESSYTIANLKAKIREKERIPVDQQCLIFASKELADCQTLANYNIQEKSTLNLILRRRKGMQIFVKGLDGKTKTLKVKSSYRIPKVKEMIFENDGIPVQDQRLIFARMQLDGNRTLADYNVTKESTLHLVLRLLGDMQIFIKIIYENKRFPLMVKSSDTILNVKKKVQDKEGIPVHQQRLFFSKKQLENRQTLASYNIQEKSTTEISLIFRGIGPPDGYKFRHDTNVKKKNYEMEAIPVHQQRLFFDGKLIEERQILANYSIQEKSTIETTLRSPQFPWLGRLDDHHTSLSATSSDTILDVKKKIHDKEGIPVHQQRLFFDGKPIKDRQTLTNYNIPRTQPLTLVRLCLGMQIYVKDLTGKMIPLRVESSDTIENVKKKILDKEGIPMHEQRLIIDDGKQLEDNLTLANYNIQENSTIHLLIRLHGS* 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2601 708 SMART ubq_7 418 492 IPR000626 GO:0005515
Mtr5g2601 708 SMART ubq_7 266 337 IPR000626 GO:0005515
Mtr5g2601 708 SMART ubq_7 342 413 IPR000626 GO:0005515
Mtr5g2601 708 SMART ubq_7 494 554 IPR000626 GO:0005515
Mtr5g2601 708 SMART ubq_7 632 704 IPR000626 GO:0005515
Mtr5g2601 708 SMART ubq_7 563 628 IPR000626 GO:0005515
Mtr5g2601 708 SUPERFAMILY Ubiquitin-like 631 707 IPR029071 -
Mtr5g2601 708 ProSiteProfiles Ubiquitin domain profile. 418 493 IPR000626 GO:0005515
Mtr5g2601 708 SUPERFAMILY Ubiquitin-like 340 417 IPR029071 -
Mtr5g2601 708 SUPERFAMILY TRAF domain-like 93 262 - -
Mtr5g2601 708 CDD RING-HC_SIAHs 34 72 - -
Mtr5g2601 708 ProSiteProfiles Ubiquitin domain profile. 632 708 IPR000626 GO:0005515
Mtr5g2601 708 ProSiteProfiles Ubiquitin domain profile. 549 626 IPR000626 GO:0005515
Mtr5g2601 708 Gene3D - 506 555 - -
Mtr5g2601 708 Gene3D - 418 498 - -
Mtr5g2601 708 Gene3D - 631 708 - -
Mtr5g2601 708 Gene3D - 341 417 - -
Mtr5g2601 708 Gene3D - 262 340 - -
Mtr5g2601 708 ProSiteProfiles Ubiquitin domain profile. 342 417 IPR000626 GO:0005515
Mtr5g2601 708 PANTHER - 258 493 - -
Mtr5g2601 708 PANTHER - 507 707 - -
Mtr5g2601 708 ProSiteProfiles Zinc finger SIAH-type profile. 89 147 IPR013010 GO:0008270
Mtr5g2601 708 MobiDBLite consensus disorder prediction 1 20 - -
Mtr5g2601 708 PANTHER UBIQUITIN 258 493 - -
Mtr5g2601 708 PANTHER UBIQUITIN 507 707 - -
Mtr5g2601 708 Gene3D - 561 630 - -
Mtr5g2601 708 ProSiteProfiles Ubiquitin domain profile. 266 341 IPR000626 GO:0005515
Mtr5g2601 708 ProSiteProfiles Ubiquitin domain profile. 508 554 IPR000626 GO:0005515
Mtr5g2601 708 Pfam Seven in absentia protein family 79 231 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr5g2601 708 PRINTS Ubiquitin signature 276 296 IPR019956 -
Mtr5g2601 708 PRINTS Ubiquitin signature 297 317 IPR019956 -
Mtr5g2601 708 PRINTS Ubiquitin signature 318 339 IPR019956 -
Mtr5g2601 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 142 IPR013083 -
Mtr5g2601 708 SUPERFAMILY Ubiquitin-like 250 341 IPR029071 -
Mtr5g2601 708 Pfam Ubiquitin family 634 705 IPR000626 GO:0005515
Mtr5g2601 708 Pfam Ubiquitin family 507 554 IPR000626 GO:0005515
Mtr5g2601 708 Pfam Ubiquitin family 566 618 IPR000626 GO:0005515
Mtr5g2601 708 Pfam Ubiquitin family 344 414 IPR000626 GO:0005515
Mtr5g2601 708 Pfam Ubiquitin family 420 484 IPR000626 GO:0005515
Mtr5g2601 708 Pfam Ubiquitin family 268 339 IPR000626 GO:0005515
Mtr5g2601 708 SUPERFAMILY Ubiquitin-like 565 626 IPR029071 -
Mtr5g2601 708 SUPERFAMILY Ubiquitin-like 418 484 IPR029071 -
Mtr5g2601 708 SUPERFAMILY Ubiquitin-like 507 554 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2601 Mtr-Chr5 34009995 34065470 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2601 632 708 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 68.831 6.90e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2601 - K08770 cre:CHLRE_11g467567v5 439.884