Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2600 ATGGAACAAGAACATGGAAGCTTTGAAAGGTTCTTAACATGGACATCACACCTTGGAATATCAGATTCACCAACAACAAACACCGACCAATCTCAGCACTCTCTTTCCTCTCTTGGTCATTCTCTCTGCGTTTCTACCTTTCCTCACTCTGGCGGTAGAGGTTTGGGTGCTGTGAGAGATCTTAAGAGGGGAGAAATTATTCTAAGAGTTCCAAAATCTGCTTTGATGACTAGTGAGAGTGTTATTATGGAAGATAAGAAGCTATGTCTTGCTGTCAATAGACACTCTTCTCTCTCCTCTGTTCAGATATTGACTGTTTGCCTGTTATACGAAGTTGGTAAAGGAAAGACTTCAAGGTGGCATCCTTACCTCGTTCATTTGCCACAAAGTTACGACTTGCTAGCCATGTTTGGTGAATTTGAGAAACAAGCTCTGCAAGTGGATGAAGCTATGTGGGTCACAGAAAAAGCTGTACAAAAAGCGAAATCAGAATGGAAAGAAGCTCATGCCTTGATGGAAGATCTCATGTTTAAGCCTCAGCTTTTAACATTTAAGGCTTGGGTTTGGGCGGCTGCAACGATATCTTCCCGCACATTGCATATACCATGGGATGAAGCTGGTTGTTTATGCCCTGTTGGTGATTTGTTTAATTATGATGCACCTGGAGAGGAGCTATCTGGTGTTGAGGACGTAGATCATTTTCTATCAAATGGAGACATGAATGTAGTGATAGACGAAGGGCAGATTGATTTTAATTCTCAGAGACTAACTGATGGTGGGTTTGAAGAAGATGCTAATGCATATTGCTTTTATGCTAGGACAAATTACAAGAAAGGAGACCAGGTTCTATTATGCTATGGAACATACACAAATTTGGAGCTTCTAGAACACTATGGATTTCTCTTGCAAGAAAATCCAAATGACAAAATTTTCATCCCTTTGGAACCTGCCATGTACACTTCTACTTCATGGTCTAAGGAATCACTCTATATCCATCCCAACGGAAAACCTTCGTTTGCGCTACTAGCTGCGTTACGATTGTGGGCAACCCCTCATAATAAAAGGAGGTCTATCGGACATCTTGCATATTCTGGTTCTCAACTGTCTGCCGACAATGAAATTATCGTTATGAAATGGTTGTCAAAAACCTGCGACGCTGTCTTAAAGAATATGCCAACATCTATTGAAGACGATACCTTACTCCTGAATGCATTGGATTGTAGTCAAGACTTTATAACTTTCATGAAGATTGTTAAACTTATGTCATCCAGGGATGAAGTTTATACCTTCTTAGAAGCTCATAATATAACAGACGCACTTAGTTTTTGTGATACGATTTCATCTAAAAAAACGAGAAGGTCTATGGATAGGTGGAAATTAGCTGTCTTATGGAGGCTCAGGTATAAGAGAGTCCTTGTTGATTGTATCTCTTATTGCAATGGAATACTGGATTCTTTCATGAAATGA 1467 0.3988 MEQEHGSFERFLTWTSHLGISDSPTTNTDQSQHSLSSLGHSLCVSTFPHSGGRGLGAVRDLKRGEIILRVPKSALMTSESVIMEDKKLCLAVNRHSSLSSVQILTVCLLYEVGKGKTSRWHPYLVHLPQSYDLLAMFGEFEKQALQVDEAMWVTEKAVQKAKSEWKEAHALMEDLMFKPQLLTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEELSGVEDVDHFLSNGDMNVVIDEGQIDFNSQRLTDGGFEEDANAYCFYARTNYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKIFIPLEPAMYTSTSWSKESLYIHPNGKPSFALLAALRLWATPHNKRRSIGHLAYSGSQLSADNEIIVMKWLSKTCDAVLKNMPTSIEDDTLLLNALDCSQDFITFMKIVKLMSSRDEVYTFLEAHNITDALSFCDTISSKKTRRSMDRWKLAVLWRLRYKRVLVDCISYCNGILDSFMK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2600 488 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 297 412 IPR036464 -
Mtr5g2600 488 Pfam Rubisco LSMT substrate-binding 335 472 IPR015353 -
Mtr5g2600 488 Gene3D set domain protein methyltransferase, domain 1 6 301 - -
Mtr5g2600 488 CDD SET_LSMT 41 301 - -
Mtr5g2600 488 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 4 473 - -
Mtr5g2600 488 SUPERFAMILY SET domain 42 305 IPR046341 -
Mtr5g2600 488 ProSiteProfiles SET domain profile. 40 287 IPR001214 GO:0005515
Mtr5g2600 488 PANTHER PROTEIN SET DOMAIN GROUP 40 4 473 - -
Mtr5g2600 488 Pfam SET domain 52 287 IPR001214 GO:0005515
Mtr5g2600 488 Gene3D - 317 486 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2600 Mtr-Chr5 34003822 34007998 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr5g2600 SET 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2600 - - gmx:100787452 792.727