Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2597 ATGGATCATCTGATGTATTCCAACCCAAAATTGCTTGATTGCTGCAATTGTTCTCAGCCCTTAACTATTCCCGTCTTTCAGTGTGATAATGGTCATATTTTTTGCTCTACCTGCTATCCTAAACTTGGGAACAAGCGTCACAAGTGCTCGTTGCGTATTAGCTCAAAACGTTGTAAAGCCATTGAGAATCTATTGCTATCTATTGAAATGTCATGTCCGAATGTAAATCATGGTTGCAATGAGAAAATAAGTTGCATTGGAAAGAGGAAGCATGAAGAAGAATGCATCCATGTGCCATGTTGCTGCCCTGTTTCAAGCTGTGACTTTGTTGCATCATCAGAAGTGTTGTCTAAGCATTTCAGCGATAAACACGGGGATTCTCATATCAAATTTTCTTATGGTCACTCCTTAATTGTCTACATCAAGTCTAATGATGAAACCATTGTTTTTCAAGAGGAAACTTATGGCAAACTATTTATTCTCTATAATAGAGCTACACTTTTGGGAAATGCTATCAATATTTGCTGTATTGGTCCAAACTCTTTCGAGTCTGAATATAGATATTATATATTGGCTAGGTCTCAGATGTGCAAACTGAAATTGCAGTCTTTTGCAAAGGATGTTCAACGTGTTGCGTTCGCAACTCCTTCCTCAGAGTTCCTTTTGATTCCATTTGGTTCTTCTTTTATAGTAATTCTCACAGATAGGTGCAGTGACTCCTGCAGTAGAGTTTGA 735 0.3796 MDHLMYSNPKLLDCCNCSQPLTIPVFQCDNGHIFCSTCYPKLGNKRHKCSLRISSKRCKAIENLLLSIEMSCPNVNHGCNEKISCIGKRKHEEECIHVPCCCPVSSCDFVASSEVLSKHFSDKHGDSHIKFSYGHSLIVYIKSNDETIVFQEETYGKLFILYNRATLLGNAINICCIGPNSFESEYRYYILARSQMCKLKLQSFAKDVQRVAFATPSSEFLLIPFGSSFIVILTDRCSDSCSRV* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2597 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 228 - -
Mtr5g2597 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 120 IPR013083 -
Mtr5g2597 244 Pfam Seven in absentia protein family 57 223 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mtr5g2597 244 SUPERFAMILY TRAF domain-like 68 225 - -
Mtr5g2597 244 ProSiteProfiles Zinc finger SIAH-type profile. 67 125 IPR013010 GO:0008270
Mtr5g2597 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 228 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2597 Mtr-Chr5 33963676 33964688 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2597 10 209 C3H Transcription Factor Family AT2G41980 27.442 1.90e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2597 K04506 - gmx:100797881 225.713