Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2590 ATGGAGACATGCAACAAAGAAAACGAAGAGATCGTTGATTCCGCAGAAGGTGTTAATAAGAATAGTTCCGTCAAAGTGATGATTTCCTTCCCAAAAGATTTCGAGTGCTGCATTTGTCTTCAACCATCGTCAAGTATTCCGGTCTTTCAGTGCGATAATGATCATATTGTTTGCTCTACTTGCTTTCCTCAACTTATGAACAACTGTCACAAGTGCTCAATGCCCATTAGCTCAAAATGTTGCAAAGTCATTGAGAATATATCGCAATCTATCCAAATGCCATGCCCGAACAAAAAATATGGCTGCAGGGAGACAATAAGTCAAAGTGGAAAGAGGAAACATGAAGAAGAATGCATCTATGTGCCATGTTACTGTCCCGTTAAAGGTTGTGATTTTGTTGCCTCATTAGAAGTGTTGTCCAACCATTTCAACCATAAACACGGGGACTCTCTAATCGAATTTTCTTATGGTCACTCCTTCACTGTCTCGTTGAATTCTAATGATGAAGCTGCTGTTCTTCAAGAGGAAAATGATGGGAAACTATTTACTCTCAATAATAGTACTATGCTTCTGGGAAATGCAGTCAATATTAGCTGCATTGATGTCAACTCTTCTGAAGCCGGTTATAGTTATGATATATTGGCTAGGTCTAAGACATCCCGTCTGAAGTTCCATTCTTCTCCGAAGAATATCCAACGGTCTACTTCAGCAACTCATTCATCAGAGTATCTCATGATTCCATTTGGTTATTTTGGTTCTTCTAAACCACTCGAGCTAGAAATTTGCATAACCCCCAAGATGCAAATATTCATAGCACATGGTTGTGGAAAGATGACCCCCTTGAAGGTGGAGAGTTCAGACACGATAGCAAATGTGAAGGATAAGATTCTTGACAAGGAAACGATCCCAGTGCACCAACAACGTCTGATGTTTGCCAATAAGCTACTAGATGACAGCCATACCCTTGCCTATTACAACATCCAAGAGAAGGCAACCCTCCACCTCATCCTCCGCCTCCCCTAG 1023 0.4096 METCNKENEEIVDSAEGVNKNSSVKVMISFPKDFECCICLQPSSSIPVFQCDNDHIVCSTCFPQLMNNCHKCSMPISSKCCKVIENISQSIQMPCPNKKYGCRETISQSGKRKHEEECIYVPCYCPVKGCDFVASLEVLSNHFNHKHGDSLIEFSYGHSFTVSLNSNDEAAVLQEENDGKLFTLNNSTMLLGNAVNISCIDVNSSEAGYSYDILARSKTSRLKFHSSPKNIQRSTSATHSSEYLMIPFGYFGSSKPLELEICITPKMQIFIAHGCGKMTPLKVESSDTIANVKDKILDKETIPVHQQRLMFANKLLDDSHTLAYYNIQEKATLHLILRLP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2590 340 SUPERFAMILY Ubiquitin-like 245 339 IPR029071 -
Mtr5g2590 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 143 IPR013083 -
Mtr5g2590 340 SUPERFAMILY TRAF domain-like 90 263 - -
Mtr5g2590 340 SMART ubq_7 267 338 IPR000626 GO:0005515
Mtr5g2590 340 ProSiteProfiles Ubiquitin domain profile. 267 340 IPR000626 GO:0005515
Mtr5g2590 340 ProSiteProfiles Zinc finger SIAH-type profile. 90 148 IPR013010 GO:0008270
Mtr5g2590 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 9 270 - -
Mtr5g2590 340 PRINTS Ubiquitin signature 277 297 IPR019956 -
Mtr5g2590 340 PRINTS Ubiquitin signature 298 318 IPR019956 -
Mtr5g2590 340 PRINTS Ubiquitin signature 319 340 IPR019956 -
Mtr5g2590 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 9 270 IPR044286 -
Mtr5g2590 340 Pfam Ubiquitin family 276 339 IPR000626 GO:0005515
Mtr5g2590 340 Gene3D - 263 340 - -
Mtr5g2590 340 Pfam Seven in absentia protein family 83 246 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2590 Mtr-Chr5 33850831 33853793 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2590 267 339 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 64.384 2.40e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2590 K04506 - gmx:100797881 221.09