Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2589 ATGAATAGCAGCAGCTCCGTTTCTATGCAAATATTCATAGACATCATGTTTGAAAACAAGAGGTTCCCTCTGATGGTTAAGAGTTCAGACACGATACTTGACGTGAAGAAGAAGATTCAGGACAAGGAAGGGATCCCAGTGCACGGATATGACTTGTTCTTTGACAATGAGGCGCTATGTTCCAACCGCCACACCCTTGCCAACTACAACATCCAAGATAATTCAACTATTGACCTCGTTGTCCGTATCATGGCGGATTAG 261 0.4368 MNSSSSVSMQIFIDIMFENKRFPLMVKSSDTILDVKKKIQDKEGIPVHGYDLFFDNEALCSNRHTLANYNIQDNSTIDLVVRIMAD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2589 86 ProSiteProfiles Ubiquitin domain profile. 9 86 IPR000626 GO:0005515
Mtr5g2589 86 PANTHER UBIQUITIN 6 82 - -
Mtr5g2589 86 SUPERFAMILY Ubiquitin-like 8 83 IPR029071 -
Mtr5g2589 86 PANTHER POLYUBIQUITIN 8-RELATED 6 82 - -
Mtr5g2589 86 Gene3D - 2 85 - -
Mtr5g2589 86 PRINTS Ubiquitin signature 20 40 IPR019956 -
Mtr5g2589 86 PRINTS Ubiquitin signature 63 84 IPR019956 -
Mtr5g2589 86 SMART ubq_7 9 82 IPR000626 GO:0005515
Mtr5g2589 86 Pfam Ubiquitin family 11 82 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2589 Mtr-Chr5 33842960 33843563 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2589 9 85 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 50.649 1.87e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2589 - K02927 mtr:MTR_5g076740 102.064