Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2585 ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGTCATGAAGGAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCTCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACCAACAGAGAAATTGATGGGCAAATACCGAATTATCCTAGTTTGCCGCCTCAGTTGATATGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGACGAAGTGTATGCTCAAATGACGCTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTGGGGATTCCAAGTAAGCAGCCTACAAATTATTTTTGCAAGACATTGACGGCGAGTGATACAAGCACACATGGAGGGTTCTCCGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCTCAAGAACTTATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGCGTATTTGTTAGTGCAAAAAGACTAGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAGTAGGCCACAAACTGTTATGCCATCATCAGTTCTTTCAAGTGATAGCATGCACATTGGACTTCTTGCAGCTGCAGCACATGCTGCAGCAACTAATAGCTGCTTTACAGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAGTTCGTCATACCACTCTCAAAATATATCAAAGCTGTGTACCATACACGCGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCAAATTCTCATTGGAGGTCTGTTAAGGTTGGTTGGGATGAATCAACAGCTGGGGAAAGACAGCCACGGGTATCGTTATGGGAAATTGAGCCTTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTAGATTGAAACGACCATGGCATCCTGGCACTTCTTCTTTTCTTGATGGCAGAGATGAGGCAACTAATGGACTAATGTGGATGCGAGGCGGTCCTGGAGACCATGGTCTTAATGCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCCAAGACTCGATCCAACTTTGCTCGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCTGCTGCTGGTTTGCAGAACCAAGGGAATGTAGATCTATTAAGGCAACAGATGATGAATTTTCAACAGCCTTTCAATTATCAACAATCAGGAAACCTCAGTCCCATGCAACTTCAGCAACAACAAGCAATTCAGCAATCCGTATCGACTAATAATATCATGCAACCACAAGGCCAAGGGTTGGCGGAGAATCTTTCTCAGCACATCCTTCAGAAATCGCACAACAATCGAGAAAACCAAACACAGCAACACAGTTATCAAGATTCAGTTTTAATTCAAGGTGATCCGCTCCATCAGAAGCAACACTCTAGTTTGCCTTCACCATCATACACAAAACCAGATTTCATAGATTCAGGCATGAAGTTTACTGCTTCGGTTTCGCCGGGTCAAAACATGCTTGGTTCACTTTCTTCTGAAGGGAGTGGCAATCTGTTGAATTTATCCAGAAGTGGTCATTCTATGCTGACTGAACAGTCACCTCAACAATCATGGGCCTCAAAGTATTCACCTTCGCAGGTCGATGCCATTGGCAATTCGATGTCGCATGTGCAGTATTCCGGAAGAGATACATCAATCGTACCGCCACATTGCAGCTCAGATGCCCAAAATTCTGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCTCGTTATACTACTGCATCTGCTCATGCCGATGCATCGACAATGCCGTTAGGGGAGTCTAGTTTCCAGGGTTCTCCATATCCTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAAGTTGATGCGCAAAACCAGACACCGATATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCACTTGACATCTCGCGGTTCAACAGCTATCACGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATCGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTCAATAATGTTTGGTATATCAAAATACTTTCTCCTGAAGATATTCAGAAAATGGGAGAAGAAGCGATAGAATCCCTTGGTCCAAGTTCTGGACAAAGGATGAACAACACTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTTGAATACTGA 2526 0.4489 MKLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLDGRDEATNGLMWMRGGPGDHGLNAMNFQGAGLLPWMQPRLDPTLLGNDHNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYQQSGNLSPMQLQQQQAIQQSVSTNNIMQPQGQGLAENLSQHILQKSHNNRENQTQQHSYQDSVLIQGDPLHQKQHSSLPSPSYTKPDFIDSGMKFTASVSPGQNMLGSLSSEGSGNLLNLSRSGHSMLTEQSPQQSWASKYSPSQVDAIGNSMSHVQYSGRDTSIVPPHCSSDAQNSVLFGVNIDSSGLLLPTTVPRYTTASAHADASTMPLGESSFQGSPYPCMQDSSELLQSAGQVDAQNQTPIFVKVYKSGSVGRSLDISRFNSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAIESLGPSSGQRMNNTGAESHDIVSGLPSLGSLEY* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2585 841 Gene3D - 126 229 IPR015300 -
Mtr5g2585 841 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Mtr5g2585 841 MobiDBLite consensus disorder prediction 576 607 - -
Mtr5g2585 841 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr5g2585 841 ProSiteProfiles PB1 domain profile. 715 799 IPR000270 GO:0005515
Mtr5g2585 841 MobiDBLite consensus disorder prediction 813 828 - -
Mtr5g2585 841 Gene3D - 711 804 - -
Mtr5g2585 841 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 826 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mtr5g2585 841 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Mtr5g2585 841 SUPERFAMILY CAD & PB1 domains 711 789 - -
Mtr5g2585 841 CDD B3_DNA 127 228 IPR003340 GO:0003677
Mtr5g2585 841 MobiDBLite consensus disorder prediction 810 841 - -
Mtr5g2585 841 Pfam AUX/IAA family 707 799 IPR033389 -
Mtr5g2585 841 PANTHER AUXIN RESPONSE FACTOR 1 826 - -
Mtr5g2585 841 SMART B3_2 128 230 IPR003340 GO:0003677
Mtr5g2585 841 Gene3D - 292 364 - -
Mtr5g2585 841 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2585 Mtr-Chr5 33783577 33793621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2585 98 812 B3 DNA Binding Superfamily AT5G37020 65.981 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr5g2585 AUX_IAA 3.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2585 - - gmx:100784804 1496.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g1932 3 32305719 32313334 Mtr5g2585 5 33783577 33793621 PCT