Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2572 ATGCTCGCCGCTGCTTCGAGGCACGCCAGGTACACACCCGGCCGCAACAACCGTGTCCGGTCACTCTTAAACGCTTCCGGCATCACCACCGGTTACTCAATTCCCACTTCAAATGGAATCAGTTACAGTTACAGTTACAGTAACCTCAACACCAGAACTTCCCCAAGCTTACTCTTCTCTATCAAAGCCTTTCTCTCCGATCCATCATCATCACATAACAGAAGTTTGAAGGTAGATGGAAGAGCGTTGTTTTCAACTTCAGCTAAAACTGATGAAGGAAGTCAGAGGAATAAAAAAACTGATTCTAATGTGGCTAAATCGCCTCCAGGTGGTGCTGATTTAAGGATCCTAAAATCGCTTGCTGGTTACCTTTGGATGAAAGATAATCCCGAATTTCGGTTTCGGGTTGTTGCTGCATTGTGTTTACTTGTTGGAGCCAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGCAGTTGATTGGTTGAATACTGCCACGGGCAATGCTGGTCTTGTTGCTTCAAGTCCTACTGTGATGACACTTTTTGCTACCCCCGCGGCAGTGTTAATTGGATATGGGATTGCTCGTTCGGGAGCTTCTGCTTTCAATGAACTGCGGACTGCTTTGTTTTCTAAGGTAGCTCTGCGAACAATTCGTTTAGTTTCAAGAAAGGTCTTTTCACATTTGCATGACCTTGACCTCCAATATCATCTAAGTCGAGAAACTGGTGCATTAAGTCGAATAATTGATCGTGGTAGTCGTGCAATAAATTTCATTCTCTCCGCTATGGTGTTCAATGTACTACCTACCATAATAGAGATATCTATGGTATCAGGTATACTGGCCTACAAATTTGGAGCACCTTTTGCGTGGATTACATCCTTGTCAGTTGCTGCTTATGTTGCTTTTACACTTTCTATCACACAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGACGCTACTACCAGGGCTATTGATTCACTTATTAATTATGAGACAGTCAAATACTTCAATAATGAAGGTCATGAAACTGATCATTATGACAAGTACCTAGAGAGGTATGAGGATGCTGCTCTGAAAACCCAACACAGTCTCGCTTTGTTGAACTTTGGTCAAAATGCTATATTTAGTGCCGCTCTTTCAACAGCAATGGTTCTGTGTTCTCATGGGATCATGAATGGCACAATGACCGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTCCAACTATCTCTTCCACTCAATTTCCTTGGTAGTGTTTATCGTGAAACTATACAAAGTCTAATTGACATGAAATCCATGTTCCAATTACTTGAGGAAAAAGCAGACATTAAGGATAAAGAAAATGCACAGCCTCTAAGATTCAATGGGGGAAAGATCCAATTTCAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCGCTACTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGACGTAACCCTTGAGAGTTTACGAAAGTCTATCGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACAATATTCCATAACATTCACTATGGTCGGCTTTCAGCAGCAGAAGAGGAGGTCTATGAAGCCGCCCGGAAAGCAGCAATCCATGACACCATCATGAGTTTTCCTGAGAAATACGCCACTGTTGTGGGAGAGCGAGGGCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGCTCGGGCATTCTTAAAAGCACCTGCAATTCTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTGAGTGCATTGAAGTCATTATCAAACAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCGATGCAGTGTGATAAGATCATTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTGCTCTTAGCAAATGCAGGAAGATATTCACAGCTTTGGGGACAGCAAAATAATACTATTGATGCAATTGACCCGGCCACCAAATTGGGAGCATAA 2157 0.421 MLAAASRHARYTPGRNNRVRSLLNASGITTGYSIPTSNGISYSYSYSNLNTRTSPSLLFSIKAFLSDPSSSHNRSLKVDGRALFSTSAKTDEGSQRNKKTDSNVAKSPPGGADLRILKSLAGYLWMKDNPEFRFRVVAALCLLVGAKVVNVQVPFLFKLAVDWLNTATGNAGLVASSPTVMTLFATPAAVLIGYGIARSGASAFNELRTALFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGALSRIIDRGSRAINFILSAMVFNVLPTIIEISMVSGILAYKFGAPFAWITSLSVAAYVAFTLSITQWRTKFRKAMNKADNDATTRAIDSLINYETVKYFNNEGHETDHYDKYLERYEDAALKTQHSLALLNFGQNAIFSAALSTAMVLCSHGIMNGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEEKADIKDKENAQPLRFNGGKIQFQNVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSAAEEEVYEAARKAAIHDTIMSFPEKYATVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSLSNNRTSIFIAHRLTTAMQCDKIIVLENGKVVEHGPHEVLLANAGRYSQLWGQQNNTIDAIDPATKLGA* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2572 718 Pfam ABC transporter 484 633 IPR003439 GO:0005524
Mtr5g2572 718 Pfam ABC transporter transmembrane region 137 421 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g2572 718 MobiDBLite consensus disorder prediction 87 107 - -
Mtr5g2572 718 Gene3D - 460 712 IPR027417 -
Mtr5g2572 718 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 137 434 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g2572 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 703 IPR027417 -
Mtr5g2572 718 SMART AAA_5 493 679 IPR003593 -
Mtr5g2572 718 Gene3D ABC transporter type 1, transmembrane domain 123 458 IPR036640 GO:0005524|GO:0016021
Mtr5g2572 718 CDD ABC_6TM_ATM1_ABCB7 139 442 - -
Mtr5g2572 718 PANTHER BNAA10G12020D PROTEIN 51 708 - -
Mtr5g2572 718 ProSitePatterns ABC transporters family signature. 605 619 IPR017871 GO:0005524
Mtr5g2572 718 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 468 702 IPR003439 GO:0005524
Mtr5g2572 718 SUPERFAMILY ABC transporter transmembrane region 131 451 IPR036640 GO:0005524|GO:0016021
Mtr5g2572 718 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 51 708 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2572 Mtr-Chr5 33627716 33640509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2572 306 704 Calmodulin-binding Proteins AT2G36910 35.366 4.81e-63 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2572 K05662 - gmx:100779975 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g2572 5 33627716 33640509 Mtr5g2572 5 33627716 33640509 ECH