Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2571 ATGATTGCCGCTGCTTCAAGGTACGCCGTTCCCACCACTTCCGGCAGTGGCAATCGTGTCCAGTCGCTTTTAACAGCTTCCTGCATCACCACAGGACACTCAATTCCCACCAAAAGCAGTTACCGTTACAGTCACAGTAATAGAATCAGTTACATTAACCGTCAATTCAGACCATGTCCAAGTTCAATTTTCTCTATAAAATGCTTTCTCTCCAATTCATCATCATCATCAAATAGCAGAGCTTCGTTTTCAACTGATGATGGAAGTCTCAAGAATCAGAAAACTGCATCTACCATCACTAAATCACCTCCAGGTGGTGGTCAAATTGCTGATATCAAGATCCTTAAATCGCTTGTTAGTTACCTTTGGATGAAAGATAATCTTGAATTTCAGCTTCGGGTTGTTGCTGCAACTTTTTTACTTGTTGGAGCTAAGGTTTTGAATGTTCAGGTCCCTTTCTTATTCAAGCTTGGAGTTGATTGGTTGAATACTGCCACAGGCAATGCTAGTGTTGTTGCTTCGAATCCTACTATGATGGCACTTTTTGCTACCCCCATGGCAGTGTTGATTGGATATGGGATTGCACGTTCTGGAGCTTCTGCTTTCAATGAACTGCGGAATGCTTTGTTTTCTAAGGTAGCACTGCGGACAATTCGTTTAGTTTCAAGGAAGGTCTTTTCACATTTGCATGACCTTGACCTTCGATATCATCTAAGTCGAGAAACTGGTGCATTAAGTCGAACAATTGATCGTGGTAGCGGTGCAATAAATTTTATTCTCTCCTCTACGTTGTTCAACATAGTACCCACCATATTAGAGATATCTATGGTATCAGGTATATTGGCCTACAAATATGGAGCACCTTTTGCGTGGATTACTTCCCTGTCAGTAGCTGCATATATTGGTTTTACACTTTCTATCACACAGTGGAGGACTAAATTCAGGAAAGCCATGAATAAGGCTGATAACGACGCTAGTACTAGGGCTATTGATTCACTTATTAATTATGAGACGGTCAAATACTTCAATAATGAAGTTCATGAAACTGATCATTATGACAAGTACCTAATGAGGTATGAGGATGCTGCTCAGAAAAGCGAACAGAGTCTTTCTTTGTTGAACTTTGGTCAAACCGCTATATTTAGTACTGCTCTTTCAACAGCAATGGTTTTGTGTTCTCATGGGATCATGAATGGCACAATGACTGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTCCAACTATCTCTTCCACTCTATTTCCTTGGTGGTGTTTATCGTGCAACTATACAAAGCCTAATCGACATGAAAGCCATGTTCCAGTTACTTGAGGAAAAAGCAGACATTAAGGATAAAGAAAATGCAAAGCCTCTAAGATTTAATGGGGGAAAGATCCAATTTGAGAATGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCACTAGTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCTACCCTTCTCAGAATGCTATTCAGATTTTTTGATCCCCATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGATGTATCCCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACCATATTTCATAACATTCACTATGGTCGGCTTTCAGCAACAAAAGAGGAGGTCTATGAAGCCGCCCGGAAAGCAGCAATCCATGACACTATCACGAGTTTTCCTGAAAAATACTCCACTGTTGTGGGAGAACGAGGGCTAAAGTTAAGTGGTGGTGAGAAACAACGTGTTTCCCTTGCTCGAGCATTCTTAAAATCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCAGTATCAACTAATCGAACTTCCATATTCATCGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGAAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTGCTCTTAGCAAATGCAGGAAGATATGCACAACTTTGGGGACAGCAAAATAACACTATTGATGTAATTGATACAGCCATCAAGGTGGGAGCATAA 2151 0.4054 MIAAASRYAVPTTSGSGNRVQSLLTASCITTGHSIPTKSSYRYSHSNRISYINRQFRPCPSSIFSIKCFLSNSSSSSNSRASFSTDDGSLKNQKTASTITKSPPGGGQIADIKILKSLVSYLWMKDNLEFQLRVVAATFLLVGAKVLNVQVPFLFKLGVDWLNTATGNASVVASNPTMMALFATPMAVLIGYGIARSGASAFNELRNALFSKVALRTIRLVSRKVFSHLHDLDLRYHLSRETGALSRTIDRGSGAINFILSSTLFNIVPTILEISMVSGILAYKYGAPFAWITSLSVAAYIGFTLSITQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEVHETDHYDKYLMRYEDAAQKSEQSLSLLNFGQTAIFSTALSTAMVLCSHGIMNGTMTVGDLVMVNGLLFQLSLPLYFLGGVYRATIQSLIDMKAMFQLLEEKADIKDKENAKPLRFNGGKIQFENVHFSYLTERKILDGISLVVPAGKSVAIVGTSGSGKSTLLRMLFRFFDPHSGSIKIDDQDIRDVSLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATKEEVYEAARKAAIHDTITSFPEKYSTVVGERGLKLSGGEKQRVSLARAFLKSPAILLCDEATSALDSTTEAEILSALKSVSTNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEVLLANAGRYAQLWGQQNNTIDVIDTAIKVGA* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2571 716 CDD ABC_6TM_ATM1_ABCB7 137 440 - -
Mtr5g2571 716 ProSitePatterns ABC transporters family signature. 603 617 IPR017871 GO:0005524
Mtr5g2571 716 SUPERFAMILY ABC transporter transmembrane region 129 449 IPR036640 GO:0005524|GO:0016021
Mtr5g2571 716 Gene3D - 458 711 IPR027417 -
Mtr5g2571 716 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 135 432 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g2571 716 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 466 700 IPR003439 GO:0005524
Mtr5g2571 716 SMART AAA_5 491 677 IPR003593 -
Mtr5g2571 716 Pfam ABC transporter transmembrane region 135 419 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr5g2571 716 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 72 707 IPR039421 -
Mtr5g2571 716 Pfam ABC transporter 482 631 IPR003439 GO:0005524
Mtr5g2571 716 CDD ABCC_ATM1_transporter 466 701 - -
Mtr5g2571 716 MobiDBLite consensus disorder prediction 74 103 - -
Mtr5g2571 716 Gene3D ABC transporter type 1, transmembrane domain 121 456 IPR036640 GO:0005524|GO:0016021
Mtr5g2571 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 701 IPR027417 -
Mtr5g2571 716 PANTHER ABC TRANSPORTER OF THE MITOCHONDRION 1-RELATED 72 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2571 Mtr-Chr5 33615619 33627077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g2571 337 702 Calmodulin-binding Proteins AT2G36910 36.802 7.01e-64 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2571 K05662 - gmx:100779975 1083.94