Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g2568 ATGTATCAATCTTCATACCAACATATGAACCACACAAATAATAATGATGGAAAATCAAAGGAGTGGACATGGGATGAAAATAAAATCTTTGAGACCATTCTCTTTGAATATCTTGAAGAAGTACAAGAAGGTCGATGGGAAAATATTGGTCTTGTTTGCGGTCGATCATCAACCGAAGTAAAAGAACATTATGAGACATTGTTGCATGACTTAGCACTCATTGAGGAAGGTCTTGTCGATTTTTCAACAAATTCTGATGATTTTATTTCAAAAGCTTCAATCGATGAGAAGAAAGATCCTCCAACTAAGAATAAGACTAAGAAAGTGGTCAGCGTGAAACATTGGACTGAAGAAGAACACAGGTTATTTTTAGAAGGGATCGAGATTCATAAGAAGGGAAATTGGAAAATGATTTCACAACATGTTCGTACAAGAACTGCAAGTCAAGTTGCTAGCCATGCTCAAAAGCATTTCCTTCACCAATTAGATGGTACATCAAAAAAGACTTATAAAAAAAGAAGCAACTTCTACATTACCTCATTGAAGGGAAATTCCAAACCTCTTCTCAATAAGGACAACATTCCATCTCCTTCTACCTCATGGGATGGAAATTTCCACCCTCTTCTCTATAAGGACAACTATGTTCCAGCTCTTCCTTCTCCTCATCTGAATTAA 675 0.3615 MYQSSYQHMNHTNNNDGKSKEWTWDENKIFETILFEYLEEVQEGRWENIGLVCGRSSTEVKEHYETLLHDLALIEEGLVDFSTNSDDFISKASIDEKKDPPTKNKTKKVVSVKHWTEEEHRLFLEGIEIHKKGNWKMISQHVRTRTASQVASHAQKHFLHQLDGTSKKTYKKRSNFYITSLKGNSKPLLNKDNIPSPSTSWDGNFHPLLYKDNYVPALPSPHLN* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g2568 224 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 114 161 IPR006447 GO:0003677
Mtr5g2568 224 Pfam Myb-like DNA-binding domain 114 157 IPR001005 -
Mtr5g2568 224 ProSiteProfiles SANT domain profile. 115 162 IPR017884 -
Mtr5g2568 224 ProSiteProfiles Myb-like domain profile. 115 158 IPR001005 -
Mtr5g2568 224 SMART sant 18 70 IPR001005 -
Mtr5g2568 224 SMART sant 111 160 IPR001005 -
Mtr5g2568 224 CDD SANT 21 68 IPR001005 -
Mtr5g2568 224 CDD SANT 115 158 IPR001005 -
Mtr5g2568 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 162 IPR017930 -
Mtr5g2568 224 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Mtr5g2568 224 SUPERFAMILY Homeodomain-like 113 161 IPR009057 -
Mtr5g2568 224 Gene3D - 114 162 - -
Mtr5g2568 224 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 213 IPR043363 -
Mtr5g2568 224 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 17 213 - -
Mtr5g2568 224 ProSiteProfiles Myb-like domain profile. 14 68 IPR001005 -
Mtr5g2568 224 Gene3D - 13 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g2568 Mtr-Chr5 33541223 33542232 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr5g2568 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g2568 - - mtr:MTR_5g075790 447.973